Browse Element(s) Details


OsAffx.25216.1.S1_x_at

Description tigr:9632.m02928
TID=OsAffx.25216.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ulp1 protease family, C-terminal catalytic domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3086011/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g493947/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g401507/11hypothetical protein
LOC_Os03g249905/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g249605/11Ulp1 protease family, C-terminal catalytic domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30800NANA4+18226935..18230195ER lumen protein retaining receptor, putative
LOC_Os04g30810NANA4+18232182..18233825F-box domain containing protein
LOC_Os04g30820OsAffx.3959.1.S1_at11/114+18236447..18237332hypothetical protein
LOC_Os04g30830OsAffx.26260.1.S1_at10/114+18238809..18240694F-box domain containing protein
LOC_Os04g30840OsAffx.14056.1.S1_at11/114+18242556..18242876hypothetical protein
LOC_Os04g30850OsAffx.26261.1.S1_at11/114+18243859..18244737hypothetical protein
LOC_Os04g30860OsAffx.25216.1.S1_x_at11/114+18250432..18255970Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g30860Os.33624.3.S1_x_at9/114+18250432..18255970Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g30870OsAffx.25217.2.S1_x_at10/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.25217.1.S1_x_at8/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.29607.3.S1_x_at1/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.29607.5.S1_x_at1/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30880Os.56204.1.S1_at11/114+18265357..18269283TBC1 domain family member 13, putative, expressed
LOC_Os04g30890NANA4+18270688..18271458gonidia forming protein GlsA, putative, expressed
LOC_Os04g30900NANA4+18272510..18276104SWIM zinc finger family protein
LOC_Os04g30910Os.17523.1.S1_at11/114+18280856..18286387SAM domain family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25216.1.S1_x_at--155--6254Chr04:18254861..18254885 (25 bp)
GATGGAGTTCACTGCAAATTCTCAT
LOC_Os04g30860
OsAffx.25216.1.S1_x_at--219--1353Chr04:18255144..18255168 (25 bp)
AGAGTTTTTCTGGAGCATCACTTGC
LOC_Os04g30860
OsAffx.25216.1.S1_x_at--220--4975Chr04:18255158..18255182 (25 bp)
GCATCACTTGCTAGACCAATTGAGA
LOC_Os04g30860
OsAffx.25216.1.S1_x_at--511--7375Chr04:18255186..18255298 (25 bp)
GTGACATGCTGTTTTTCCCAATATT
LOC_Os04g30860
OsAffx.25216.1.S1_x_at--865--4955Chr04:18255299..18255323 (25 bp)
GCATTTGAGGCATTGGTTTCTGTTT
LOC_Os04g30860
OsAffx.25216.1.S1_x_at--887--5671Chr04:18255344..18255368 (25 bp)
GACTTTTGTTTTCATTGACTCCTTA
LOC_Os04g30860
OsAffx.25216.1.S1_x_at--226--5051Chr04:18255406..18255500 (25 bp)
GCAGACTGATATCTAATTTTTCAAT
LOC_Os04g30860
OsAffx.25216.1.S1_x_at--635--8153Chr04:18255509..18255533 (25 bp)
GGAAATTTGTCCCTGAACATCCAAT
LOC_Os04g30860
OsAffx.25216.1.S1_x_at--1079--9715Chr04:18255548..18255572 (25 bp)
TCAAGATAATATACCCACCTCGTCC
LOC_Os04g30860
OsAffx.25216.1.S1_x_at--259--8791Chr04:18255736..18255760 (25 bp)
TGTTAACCAACCAGTTCTCTCAAAA
LOC_Os04g30860
OsAffx.25216.1.S1_x_at--787--6813Chr04:18255800..18255824 (25 bp)
GTTTTTCCATCCATGCAACATTGTG
LOC_Os04g30860
Target Sequence 
GATGGAGTTCACTGCAAATTCTCATCTTTTGGTTCTTCATTCAAACAAGAATGATCTTATGAAACACCCTTCAAAAACTA
ATTTTGGAATGGTCCAAAAGAGTTTTTCTGGAGCATCACTTGCTAGACCAATTGAGACATGTGACATGCTGTTTTTCCCA
ATATTGCATTTGAGGCATTGGTTTCTGTTTGTTGTTGATTTGAAAGATGAGACTTTTGTTTTCATTGACTCCTTATTTGA
AGAAGAAGAAGACTATCAATACAATGCTAGATGCAGACTGATATCTAATTTTTCAATTGTATGGAGGAAATTTGTCCCTG
AACATCCAATTAACTTTGCTAGTTTCAAGATAATATACCCACCTCGTCCAAGACAAACAAATCGCATTGATTGTGGTATT
TTTACTCTGAAATTCATGGAAATTTGGCGTCCAAGAGTTATGTTAACCAACCAGTTCTCTCAAAAAGACATTCCTAACAT
AAGGATTCAATATGTCAACAAATTGTTTTTCCATCCATGCAACATTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25216.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis