Browse Element(s) Details


Os.56204.1.S1_at

Description gb:AK109611.1
DB_XREF= gi:32994820
TID=Os.56204.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.56204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-G05, full insert sequence.
FL= gb:AK109611.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3088011/11TBC1 domain family member 13, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30830OsAffx.26260.1.S1_at10/114+18238809..18240694F-box domain containing protein
LOC_Os04g30840OsAffx.14056.1.S1_at11/114+18242556..18242876hypothetical protein
LOC_Os04g30850OsAffx.26261.1.S1_at11/114+18243859..18244737hypothetical protein
LOC_Os04g30860OsAffx.25216.1.S1_x_at11/114+18250432..18255970Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g30860Os.33624.3.S1_x_at9/114+18250432..18255970Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g30870OsAffx.25217.2.S1_x_at10/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.25217.1.S1_x_at8/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.29607.3.S1_x_at1/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.29607.5.S1_x_at1/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30880Os.56204.1.S1_at11/114+18265357..18269283TBC1 domain family member 13, putative, expressed
LOC_Os04g30890NANA4+18270688..18271458gonidia forming protein GlsA, putative, expressed
LOC_Os04g30900NANA4+18272510..18276104SWIM zinc finger family protein
LOC_Os04g30910Os.17523.1.S1_at11/114+18280856..18286387SAM domain family protein, expressed
LOC_Os04g30920OsAffx.26262.1.S1_at11/114+18289013..18289867expressed protein
LOC_Os04g30920Os.56655.1.S1_at1/114+18289013..18289867expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56204.1.S1_at--1018--9651Chr04:18268434..18268458 (25 bp)
TCAGCAGAGCCGGATGCATTTTTCT
LOC_Os04g30880
Os.56204.1.S1_at--420--3591Chr04:18268450..18268474 (25 bp)
CATTTTTCTGTTTCGTTGAGCTGCT
LOC_Os04g30880
Os.56204.1.S1_at--371--5891Chr04:18268467..18268491 (25 bp)
GAGCTGCTTAGTGGATTTCGGGATA
LOC_Os04g30880
Os.56204.1.S1_at--222--2211Chr04:18268510..18268534 (25 bp)
ACAACAGTGTGGTGGGCATACGCTC
LOC_Os04g30880
Os.56204.1.S1_at--30--4971Chr04:18268525..18268549 (25 bp)
GCATACGCTCCACAATCAGCAAGTT
LOC_Os04g30880
Os.56204.1.S1_at--26--5172Chr04:18268543..18268567 (25 bp)
GCAAGTTATCCCAGCTCCTGAAAAG
LOC_Os04g30880
Os.56204.1.S1_at--290--871Chr04:18268584..18268607 (24 bp)
ATGGCGGCATTTAGAGGTTGTGACC
LOC_Os04g30880
Os.56204.1.S1_at--1078--6751Chr04:18268691..18268715 (25 bp)
GTTAATCCACAGTTTTACGCATTCA
LOC_Os04g30880
Os.56204.1.S1_at--927--1311Chr04:18268715..18268739 (25 bp)
AGATGGATCACCTTGCTATTGACGC
LOC_Os04g30880
Os.56204.1.S1_at--672--2831Chr04:18268748..18268772 (25 bp)
AAGTTTCGCGACTGCATCCATATAT
LOC_Os04g30880
Os.56204.1.S1_at--284--3331Chr04:18268779..18268803 (25 bp)
CACTGTTAGGTGATCCTGAGGGACC
LOC_Os04g30880
Target Sequence 
TCAGCAGAGCCGGATGCATTTTTCTGTTTCGTTGAGCTGCTTAGTGGATTTCGGGATAACTTTTGCAAACAGCTTGACAA
CAGTGTGGTGGGCATACGCTCCACAATCAGCAAGTTATCCCAGCTCCTGAAAAGGCACGATGAAGAGCTATGGCGGCATT
TAGAGGTTGTGACCAAGGTTAATCCACAGTTTTACGCATTCAGATGGATCACCTTGCTATTGACGCAGGAATTCAAGTTT
CGCGACTGCATCCATATATGGGATGCACTGTTAGGTGATCCTGAGGGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis