Browse Element(s) Details


OsAffx.26262.1.S1_at

Description tigr:9632.m02934
TID=OsAffx.26262.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3092011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30870OsAffx.25217.2.S1_x_at10/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.25217.1.S1_x_at8/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.29607.3.S1_x_at1/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.29607.5.S1_x_at1/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30880Os.56204.1.S1_at11/114+18265357..18269283TBC1 domain family member 13, putative, expressed
LOC_Os04g30890NANA4+18270688..18271458gonidia forming protein GlsA, putative, expressed
LOC_Os04g30900NANA4+18272510..18276104SWIM zinc finger family protein
LOC_Os04g30910Os.17523.1.S1_at11/114+18280856..18286387SAM domain family protein, expressed
LOC_Os04g30920OsAffx.26262.1.S1_at11/114+18289013..18289867expressed protein
LOC_Os04g30920Os.56655.1.S1_at1/114+18289013..18289867expressed protein
LOC_Os04g30930OsAffx.3961.1.S1_at11/114+18302966..18306772NB-ARC domain containing protein
LOC_Os04g30940OsAffx.32166.1771.S1_s_at1/114+18307939..18309523hypothetical protein
LOC_Os04g30950OsAffx.14058.1.S1_at10/114+18312977..18313812hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26262.1.S1_at--363--571Chr04:18289545..18289569 (25 bp)
ATCCATCCAAATCAAATCCGCGGGC
LOC_Os04g30920
OsAffx.26262.1.S1_at--299--6611Chr04:18289469..18289493 (25 bp)
GATTGTGGATGTGCCAGATCTTGAC
LOC_Os04g30920
OsAffx.26262.1.S1_at--123--6431Chr04:18289453..18289477 (25 bp)
GATCTTGACAAGAGCGAATCCGTGG
LOC_Os04g30920
OsAffx.26262.1.S1_at--240--3791Chr04:18289410..18289434 (25 bp)
CTCGGTCAGATGATCGGCTAAAACT
LOC_Os04g30920
OsAffx.26262.1.S1_at--42--4851Chr04:18289394..18289418 (25 bp)
GCTAAAACTAATGTGGCTGGCCTCA
LOC_Os04g30920
OsAffx.26262.1.S1_at--580--2711Chr04:18289247..18289271 (25 bp)
AAGCAGCCAGCGGATTCAGAAGCTA
LOC_Os04g30920
OsAffx.26262.1.S1_at--677--7631Chr04:18289218..18289242 (25 bp)
GGGACTCCATACAGATCATGATTCA
LOC_Os04g30920
OsAffx.26262.1.S1_at--514--911Chr04:18289143..18289167 (25 bp)
AGGCGGCGCTGGTTATATATATGGA
LOC_Os04g30920
OsAffx.26262.1.S1_at--384--8071Chr04:18289109..18289133 (25 bp)
GGAGAAGACGCTCTGTCTAGCTTTT
LOC_Os04g30920
OsAffx.26262.1.S1_at--769--7151Chr04:18289095..18289119 (25 bp)
GTCTAGCTTTTAGGGTTTCTCGTGT
LOC_Os04g30920
OsAffx.26262.1.S1_at--683--10311Chr04:18289080..18289104 (25 bp)
TTTCTCGTGTTGGTGAGTGGGCTCT
LOC_Os04g30920
Target Sequence 
ATCCATCCAAATCAAATCCGCGGGCGGAAGCTAGTAGTAAGATTTCGGTTGACTTGATGGTGGTGGAGAAGAAGAGGATT
GTGGATGTGCCAGATCTTGACAAGAGCGAATCCGTGGGGAGAAATCGAGGAGACGCTCGGTCAGATGATCGGCTAAAACT
AATGTGGCTGGCCTCAGGAAGGGGCGCCGAGCGCCGTGGTTACTCCGCGCTCGCCGCCGCTGTACCAGCGAGCAAACCAC
CAACCCAAATCAAACCAAACCAAACCAAAATCAAACAGCAAGAAGAAAATCAAAAGCAAAGCAGCCAGCGGATTCAGAAG
CTAGGGGGGGACTCCATACAGATCATGATTCAGGAAGAGAGGAGCGGATTGGATCGGGGGTTTGAGATGTGGAGAGAAAG
GGAGGCGGCGCTGGTTATATATATGGATGGATGGATGGAGAAGACGCTCTGTCTAGCTTTTAGGGTTTCTCGTGTTGGTG
AGTGGGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis