Browse Element(s) Details


OsAffx.3961.1.S1_at

Description tigr:9632.m02935
TID=OsAffx.3961.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3093011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30910Os.17523.1.S1_at11/114+18280856..18286387SAM domain family protein, expressed
LOC_Os04g30920OsAffx.26262.1.S1_at11/114+18289013..18289867expressed protein
LOC_Os04g30920Os.56655.1.S1_at1/114+18289013..18289867expressed protein
LOC_Os04g30930OsAffx.3961.1.S1_at11/114+18302966..18306772NB-ARC domain containing protein
LOC_Os04g30940OsAffx.32166.1771.S1_s_at1/114+18307939..18309523hypothetical protein
LOC_Os04g30950OsAffx.14058.1.S1_at10/114+18312977..18313812hypothetical protein
LOC_Os04g30960NANA4+18314970..18315230hypothetical protein
LOC_Os04g30970OsAffx.27200.1.S1_at1/114+18315647..18315886hypothetical protein
LOC_Os04g30980OsAffx.14061.1.S1_at10/114+18318084..18320399hypothetical protein
LOC_Os04g30990Os.35344.18.S1_x_at10/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g30990Os.35344.3.S1_x_at9/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g30990OsAffx.22940.5.S1_x_at3/114+18323180..18329075transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3961.1.S1_at--402--2691Chr04:18306178..18306202 (25 bp)
AAGCTGCCACGAACTTGCGGATTTA
LOC_Os04g30930
OsAffx.3961.1.S1_at--643--5911Chr04:18306215..18306239 (25 bp)
GAGCTAACATCCCTCACAGAGTTGA
LOC_Os04g30930
OsAffx.3961.1.S1_at--535--10751Chr04:18306261..18306285 (25 bp)
TTGAAGAGCTTCCTGTCGTTTCATC
LOC_Os04g30930
OsAffx.3961.1.S1_at--971--9391Chr04:18306276..18306300 (25 bp)
TCGTTTCATCTCAGCGGTTTCAAGC
LOC_Os04g30930
OsAffx.3961.1.S1_at--132--3831Chr04:18306324..18306348 (25 bp)
CTGCCTGTACTTCATACCTTAGGAA
LOC_Os04g30930
OsAffx.3961.1.S1_at--59--151Chr04:18306365..18306389 (25 bp)
ATTAGCGATCCATTTGTCTTGCAAT
LOC_Os04g30930
OsAffx.3961.1.S1_at--1158--1431Chr04:18306401..18306425 (25 bp)
AGAAGCGTCACCTCAGTTACAAATA
LOC_Os04g30930
OsAffx.3961.1.S1_at--341--8891Chr04:18306501..18306525 (25 bp)
TGAGGGATGCTTCCCATCTGGAATT
LOC_Os04g30930
OsAffx.3961.1.S1_at--232--491Chr04:18306516..18306540 (25 bp)
ATCTGGAATTTCTGCCCTCAATCAT
LOC_Os04g30930
OsAffx.3961.1.S1_at--1065--6751Chr04:18306586..18306610 (25 bp)
GTTAATCCAGTCACTTCCAGAACTT
LOC_Os04g30930
OsAffx.3961.1.S1_at--840--10591Chr04:18306620..18306644 (25 bp)
TTGCGGAGGCTTCAAATCCTTGGTT
LOC_Os04g30930
Target Sequence 
AAGCTGCCACGAACTTGCGGATTTAAATGGCATGGAAGAGCTAACATCCCTCACAGAGTTGAAGGTGATTGGGTGCAACA
AGCTTGAAGAGCTTCCTGTCGTTTCATCTCAGCGGTTTCAAGCCTCTGAACACAACCAAGTTGTCACTGCCTGTACTTCA
TACCTTAGGAAACTTAAGAGACTGCAAATTAGCGATCCATTTGTCTTGCAATGGGCCCCACTGAGAAGCGTCACCTCAGT
TACAAATATGACCATCAACAGCTGTAGATGCTTACCTGAGGAGTGGTTGATGCAAAACTGCAATAATCTTCAACGCATTG
GAGTGAGGGATGCTTCCCATCTGGAATTTCTGCCCTCAATCATGGCAAGCCTCACCTCCCTTGAATCCTTAGAGTTTACA
AGAGTTATGTTAATCCAGTCACTTCCAGAACTTCCTTCCTCCTTGCGGAGGCTTCAAATCCTTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis