Browse Element(s) Details


OsAffx.32166.1771.S1_s_at

Description tigr:9630.m04952
TID=OsAffx.32166.1771
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g505409/11expressed protein
LOC_Os11g334402/11expressed protein
LOC_Os05g274901/11retrotransposon protein, putative, unclassified
LOC_Os04g309401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50490Os.17509.1.S1_at11/112+30833330..30836720Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g50490OsAffx.15414.1.S1_x_at3/112+30833330..30836720Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g50490OsAffx.22010.1.S1_x_at3/112+30833330..30836720Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g50500NANA2+30837115..30837549transposon protein, putative, unclassified
LOC_Os02g50510OsAffx.22848.3.S1_x_at4/112+30838230..30844188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50510OsAffx.22848.4.S1_x_at1/112+30838230..30844188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50520NANA2+30847106..30847687transposon protein, putative, unclassified
LOC_Os02g50530OsAffx.30226.2.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50530OsAffx.442.1.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50530Os.46785.2.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50540OsAffx.32166.1771.S1_s_at9/112+30853369..30854873expressed protein
LOC_Os02g50550Os.6049.1.S1_at11/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50550Os.52837.1.S1_x_at1/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50550Os.52837.1.S1_at1/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50560Os.50871.1.S1_at11/112+30866902..30877002DEAD/DEAH box helicase, putative, expressed
LOC_Os02g50570Os.5163.1.S1_at11/112+30876083..30880539transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32166.1771.S1_s_at--1093--108513Chr11:19287859..19288038 (25 bp)
TTGGCCGGGCCGACAACGATTCCCT
LOC_Os11g33440
OsAffx.32166.1771.S1_s_at--643--8413Chr11:19287860..19288271 (25 bp)
TGGCCGGGCCGACAACGATTCCCTG
LOC_Os11g33440
OsAffx.32166.1771.S1_s_at--131--8411Chr02:30854482..30854506 (25 bp)
GGCCGGGCCGACAACGATTCCCTGA
LOC_Os02g50540
OsAffx.32166.1771.S1_s_at--533--4491Chr02:30854483..30854507 (25 bp)
GCCGGGCCGACAACGATTCCCTGAG
LOC_Os02g50540
OsAffx.32166.1771.S1_s_at--576--4191Chr02:30854484..30854508 (25 bp)
CCGGGCCGACAACGATTCCCTGAGG
LOC_Os02g50540
OsAffx.32166.1771.S1_s_at--236--3971Chr02:30854485..30854509 (25 bp)
CGGGCCGACAACGATTCCCTGAGGG
LOC_Os02g50540
OsAffx.32166.1771.S1_s_at--196--7551Chr02:30854486..30854510 (25 bp)
GGGCCGACAACGATTCCCTGAGGGC
LOC_Os02g50540
OsAffx.32166.1771.S1_s_at--370--8411Chr02:30854487..30854511 (25 bp)
GGCCGACAACGATTCCCTGAGGGCG
LOC_Os02g50540
OsAffx.32166.1771.S1_s_at--594--4512Chr02:30854488..30854512 (25 bp)
GCCGACAACGATTCCCTGAGGGCGT
LOC_Os02g50540
Target Sequence 
TTGGCCGGGCCGACAACGATTCCCTGAGGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32166.1771.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis