Browse Element(s) Details


Os.5163.1.S1_at

Description gb:AK072070.1
DB_XREF= gi:32982093
TID=Os.5163.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5163 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013110I22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110I22, full insert sequence.
FL= gb:AK072070.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5057011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50530OsAffx.30226.2.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50530OsAffx.442.1.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50530Os.46785.2.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50540OsAffx.32166.1771.S1_s_at9/112+30853369..30854873expressed protein
LOC_Os02g50550Os.6049.1.S1_at11/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50550Os.52837.1.S1_x_at1/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50550Os.52837.1.S1_at1/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50560Os.50871.1.S1_at11/112+30866902..30877002DEAD/DEAH box helicase, putative, expressed
LOC_Os02g50570Os.5163.1.S1_at11/112+30876083..30880539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g50580OsAffx.3027.1.S1_at11/112+30885429..30886141hypothetical protein
LOC_Os02g50590OsAffx.24814.1.S1_at11/112+30889298..30892658hypothetical protein
LOC_Os02g50600Os.26079.1.S1_at11/112+30893712..30895431glycosyl transferase family 8 protein, putative, expressed
LOC_Os02g50610Os.31535.1.A1_at1/112+30898909..30903290hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5163.1.S1_at--569--4191Chr02:30876657..30876681 (25 bp)
CCCTCCAGCTGTTCATCATAGTTAG
LOC_Os02g50570
Os.5163.1.S1_at--499--6731Chr02:30876647..30876671 (25 bp)
GTTCATCATAGTTAGGGACTTCCTG
LOC_Os02g50570
Os.5163.1.S1_at--601--7911Chr02:30876617..30876641 (25 bp)
GGTTGATCAGGCATGTGTAGACATC
LOC_Os02g50570
Os.5163.1.S1_at--416--8871Chr02:30876503..30876527 (25 bp)
TGATGACGCACCAGCACCGGCTCAG
LOC_Os02g50570
Os.5163.1.S1_at--359--1331Chr02:30876447..30876471 (25 bp)
AGAGGGTCATGCCAAGATTCCCCAA
LOC_Os02g50570
Os.5163.1.S1_at--964--2491Chr02:30876424..30876448 (25 bp)
AACTTGCCGGCACATTTTATGAAGG
LOC_Os02g50570
Os.5163.1.S1_at--321--671Chr02:30876406..30876430 (25 bp)
ATGAAGGACAATGCAGACTCTGATT
LOC_Os02g50570
Os.5163.1.S1_at--644--4931Chr02:30876323..30876347 (25 bp)
GCATTGGTTGTTTTTTGGAGGTATA
LOC_Os02g50570
Os.5163.1.S1_at--404--7411Chr02:30876265..30876289 (25 bp)
GTGTTGGTTATTTTCTCCATTGCTT
LOC_Os02g50570
Os.5163.1.S1_at--1108--3871Chr02:30876146..30876170 (25 bp)
CTGTCAATTTGATAACTGCATGTGC
LOC_Os02g50570
Os.5163.1.S1_at--217--7831Chr02:30876086..30876110 (25 bp)
GGTCAATGTGGTACTTACAGATTTC
LOC_Os02g50570
Target Sequence 
CCCTCCAGCTGTTCATCATAGTTAGGGACTTCCTGGGGATGGTTGATCAGGCATGTGTAGACATCAAGAGGAAATTGCAG
CAGCAAAAGAAGCCAACACCACCACCGTCATCATCACAACCGGCGGCCCCAGNGGCCACAACCAAGGGGGCAGCTGATGA
CGCACCAGCACCGGCTCAGAAACCACCGGAAGAGGTAGATAGCAAAAGGAAGAGGGTCATGCCAAGATTCCCCAACTTGC
CGGCACATTTTATGAAGGACAATGCAGACTCTGATTCAAGTAGTGACGAGGAATAGAATGAATGGAGACGTGTAACTGTA
AATGATGATTGTTTGCATTGGTTGTTTTTTGGAGGTATAGGTTAGAAGCAGACTGTACATAATACATTATTTGTGTTGGT
TATTTTCTCCATTGCTTCATATAAGTAGTATAAGAACGTGGATAGATTTTTGTTTAGAAACTTGTACAAAATTTGATACA
AGGATATCAAGAATCGCTTGGAAAATGATNTCTGTCAATTTGATAACTGCATGTGCATGATACAGCAAAGAATTGCCTAC
CTAAAACAAATGGTCAATGTGGTACTTACAGATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis