Browse Element(s) Details


Os.6049.1.S1_at

Description gb:AK099699.1
DB_XREF= gi:32984908
TID=Os.6049.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074K16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074K16, full insert sequence.
FL= gb:AK099699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5055011/11Dynamin-2B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50490Os.17509.1.S1_at11/112+30833330..30836720Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g50490OsAffx.15414.1.S1_x_at3/112+30833330..30836720Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g50490OsAffx.22010.1.S1_x_at3/112+30833330..30836720Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g50500NANA2+30837115..30837549transposon protein, putative, unclassified
LOC_Os02g50510OsAffx.22848.3.S1_x_at4/112+30838230..30844188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50510OsAffx.22848.4.S1_x_at1/112+30838230..30844188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50520NANA2+30847106..30847687transposon protein, putative, unclassified
LOC_Os02g50530OsAffx.30226.2.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50530OsAffx.442.1.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50530Os.46785.2.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50540OsAffx.32166.1771.S1_s_at9/112+30853369..30854873expressed protein
LOC_Os02g50550Os.6049.1.S1_at11/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50550Os.52837.1.S1_x_at1/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50550Os.52837.1.S1_at1/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50560Os.50871.1.S1_at11/112+30866902..30877002DEAD/DEAH box helicase, putative, expressed
LOC_Os02g50570Os.5163.1.S1_at11/112+30876083..30880539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g50580OsAffx.3027.1.S1_at11/112+30885429..30886141hypothetical protein
LOC_Os02g50590OsAffx.24814.1.S1_at11/112+30889298..30892658hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0006896biological_processGolgi to vacuole transport
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009920biological_processcell plate formation (sensu Magnoliophyta)
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0016192biological_processvesicle-mediated transport
GO:0005794cellular_componentGolgi apparatus
GO:0005874cellular_componentmicrotubule
GO:0009504cellular_componentcell plate
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6049.1.S1_at--842--8111Chr02:30856333..30856357 (25 bp)
GGACTGGAGGTCTGCGTTCGATTCT
LOC_Os02g50550
Os.6049.1.S1_at--614--6571Chr02:30856314..30856338 (25 bp)
GATTCTGCATCAAATGGCTCTGTTG
LOC_Os02g50550
Os.6049.1.S1_at--350--4811Chr02:30856298..30856322 (25 bp)
GCTCTGTTGATCGATCCAGTTCACA
LOC_Os02g50550
Os.6049.1.S1_at--521--2971Chr02:30856212..30856236 (25 bp)
AATGGTGGTAACTCTGGCAGCCGAC
LOC_Os02g50550
Os.6049.1.S1_at--980--2711Chr02:30856142..30856166 (25 bp)
AAGCATGTTGATCATCATCCGCCAA
LOC_Os02g50550
Os.6049.1.S1_at--723--9611Chr02:30856128..30856152 (25 bp)
TCATCCGCCAACATCATATTTTCAT
LOC_Os02g50550
Os.6049.1.S1_at--666--9531Chr02:30855945..30855969 (25 bp)
TCTACAGTTGTTTCACGATCATTTT
LOC_Os02g50550
Os.6049.1.S1_at--211--231Chr02:30855917..30855941 (25 bp)
ATATTGATCTGTCTGAGGCTCGCTC
LOC_Os02g50550
Os.6049.1.S1_at--613--6531Chr02:30855877..30855901 (25 bp)
GATTTTGTTACCACAGATCGGTTGA
LOC_Os02g50550
Os.6049.1.S1_at--392--8851Chr02:30855855..30855879 (25 bp)
TGATCTTGGTCTTGTACTCTGCTGT
LOC_Os02g50550
Os.6049.1.S1_at--279--2011Chr02:30855840..30855864 (25 bp)
ACTCTGCTGTTGTAATTCTTCCATC
LOC_Os02g50550
Target Sequence 
GGACTGGAGGTCTGCGTTCGATTCTGCATCAAATGGCTCTGTTGATCGATCCAGTTCACACAATGAAACAAGGTCAAGAA
GTGCTGACAGCCGTGGCAAACNCTATGAAAATGGGGACGTGAATGGTGGTAACTCTGGCAGCCGACGCACACCAAACCGT
TTGCCACCAGCACCTCCAGGGCAAAAATATTAAGCATGTTGATCATCATCCGCCAACATCATATTTTCATGCTAGGTATG
AAGTACAACGGAATTGATGCATCGAGAACCATTTGATTCAGGGGGNATGGCATGCATGGGCTCGAAGAATAGAGCTGACG
AGAGATTTGCATGAATGGTGTGTATCCAGAGGATCTCAGTTGTTCATAGAAATATACTCCTATAGTTTATCTACAGTTGT
TTCACGATCATTTTGGCATATTGATCTGTCTGAGGCTCGCTCAGCCTGTGGGTGTGGGATTTTGTTACCACAGATCGGTT
GATCTTGGTCTTGTACTCTGCTGTTGTAATTCTTCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis