Browse Element(s) Details


Os.50871.1.S1_at

Description gb:AK099845.1
DB_XREF= gi:32985054
TID=Os.50871.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50871 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013109D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013109D01, full insert sequence.
FL= gb:AK059128.1 gb:AK099845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5056011/11DEAD/DEAH box helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50510OsAffx.22848.3.S1_x_at4/112+30838230..30844188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50510OsAffx.22848.4.S1_x_at1/112+30838230..30844188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50520NANA2+30847106..30847687transposon protein, putative, unclassified
LOC_Os02g50530OsAffx.30226.2.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50530OsAffx.442.1.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50530Os.46785.2.S1_x_at1/112+30848171..30851796retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g50540OsAffx.32166.1771.S1_s_at9/112+30853369..30854873expressed protein
LOC_Os02g50550Os.6049.1.S1_at11/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50550Os.52837.1.S1_x_at1/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50550Os.52837.1.S1_at1/112+30855789..30865302Dynamin-2B, putative, expressed
LOC_Os02g50560Os.50871.1.S1_at11/112+30866902..30877002DEAD/DEAH box helicase, putative, expressed
LOC_Os02g50570Os.5163.1.S1_at11/112+30876083..30880539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g50580OsAffx.3027.1.S1_at11/112+30885429..30886141hypothetical protein
LOC_Os02g50590OsAffx.24814.1.S1_at11/112+30889298..30892658hypothetical protein
LOC_Os02g50600Os.26079.1.S1_at11/112+30893712..30895431glycosyl transferase family 8 protein, putative, expressed
LOC_Os02g50610Os.31535.1.A1_at1/112+30898909..30903290hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0010093biological_processspecification of floral organ identity
GO:0016070biological_processRNA metabolism
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003724molecular_functionRNA helicase activity
GO:0003887molecular_functionDNA-directed DNA polymerase activity
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50871.1.S1_at--928--3211Chr02:30874496..30874520 (25 bp)
CAAGGTCCTTTTGGATCTGAAGCCT
LOC_Os02g50560
Os.50871.1.S1_at--164--5431Chr02:30874514..30874538 (25 bp)
GAAGCCTTCTCAACTTGCAGCAATA
LOC_Os02g50560
Os.50871.1.S1_at--275--2511Chr02:30874567..30874591 (25 bp)
AACTTCGTCCCTGGAAAAACAGCAG
LOC_Os02g50560
Os.50871.1.S1_at--844--10111Chr02:30875501..30875525 (25 bp)
TATGAACCATCTTCTGTTGTTACTG
LOC_Os02g50560
Os.50871.1.S1_at--414--9151Chr02:30875686..30875710 (25 bp)
TGCGAAATAGATGCCCAGTTTGCTG
LOC_Os02g50560
Os.50871.1.S1_at--446--5791Chr02:30875801..30875825 (25 bp)
GACGCACGATTGATTTACTAGCCCA
LOC_Os02g50560
Os.50871.1.S1_at--799--3711Chr02:30875818..30875940 (25 bp)
CTAGCCCAGATTCCAAAATTGCCAG
LOC_Os02g50560
Os.50871.1.S1_at--2--10731Chr02:30875974..30875998 (25 bp)
TTGCTTGCAACATCATGGACCGGGT
LOC_Os02g50560
Os.50871.1.S1_at--499--1631Chr02:30875992..30876016 (25 bp)
ACCGGGTACCGATAAGTGAGCTTGC
LOC_Os02g50560
Os.50871.1.S1_at--24--2851Chr02:30876095..30876119 (25 bp)
AAGTACCACATTGACCATTTGTTTT
LOC_Os02g50560
Os.50871.1.S1_at--530--7851Chr02:30876121..30876145 (25 bp)
GGTAGGCAATTCTTTGTTGTATCAT
LOC_Os02g50560
Target Sequence 
CAAGGTCCTTTTGGATCTGAAGCCTTCTCAACTTGCAGCAATATGTGGAAGTTTAGTGTCAGAAGGGATCAAACTTCGTC
CCTGGAAAAACAGCAGTTATGTATATGAACCATCTTCTGTTGTTACTGGTGTTATAAACTACTTAGAAGAGCAGAGAAAC
TCACTCGTCGATCTCCAAGAGAAGCACAGTGTAAAGATACCCTGCGAAATAGATGCCCAGTTTGCTGGGATGGTTGAAGC
CTGGGCATCAGGGTTGACCTGGAGGGAGATAATGATGGACTCGGCAATGGATGATGGAGATTTAGCCCGTCTGCTCAGAC
GCACGATTGATTTACTAGCCCAGATTCCAAAATTGCCAGATATAGATCCGGTTCTCCAAAAGAACGCACAAATTGCTTGC
AACATCATGGACCGGGTACCGATAAGTGAGCTTGCTGGCTGAAAGTATGTGAAATCTGTAAGTACCACATTGAATGTGAA
ATCTGTAAGTACCACATTGAATGTGAAATCTGTAAGTACCACATTGACCATTTGTTTTAGGTAGGCAATTCTTTGTTGTA
TCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis