Browse Element(s) Details


Os.56655.1.S1_at

Description gb:AK110255.1
DB_XREF= gi:32995464
TID=Os.56655.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-162-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-162-H12, full insert sequence.
FL= gb:AK110255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g309201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30870OsAffx.25217.2.S1_x_at10/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.25217.1.S1_x_at8/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.29607.3.S1_x_at1/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.29607.5.S1_x_at1/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30880Os.56204.1.S1_at11/114+18265357..18269283TBC1 domain family member 13, putative, expressed
LOC_Os04g30890NANA4+18270688..18271458gonidia forming protein GlsA, putative, expressed
LOC_Os04g30900NANA4+18272510..18276104SWIM zinc finger family protein
LOC_Os04g30910Os.17523.1.S1_at11/114+18280856..18286387SAM domain family protein, expressed
LOC_Os04g30920OsAffx.26262.1.S1_at11/114+18289013..18289867expressed protein
LOC_Os04g30920Os.56655.1.S1_at1/114+18289013..18289867expressed protein
LOC_Os04g30930OsAffx.3961.1.S1_at11/114+18302966..18306772NB-ARC domain containing protein
LOC_Os04g30940OsAffx.32166.1771.S1_s_at1/114+18307939..18309523hypothetical protein
LOC_Os04g30950OsAffx.14058.1.S1_at10/114+18312977..18313812hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56655.1.S1_at--192--4571Chr04:18289284..18289386 (25 bp)
GCGCCGAGCGCCGACAGCAAGAAGA
LOC_Os04g30920
Os.56655.1.S1_at--79--7151NONE
GTCTTCCTCCGCGATGACAAGTCTT
NONE
Os.56655.1.S1_at--263--5611NONE
GACAAGTCTTCGACCAAGGAGGAGA
NONE
Os.56655.1.S1_at--692--4971NONE
GCATCGTCGGACTACTCGACCAAGA
NONE
Os.56655.1.S1_at--683--4651NONE
GCGTCGAGACCAGGGATGCCGTCAT
NONE
Os.56655.1.S1_at--298--5851NONE
GACCAGCGATAAGGTGGGCAGCCTC
NONE
Os.56655.1.S1_at--456--1831NONE
ACGCAGGTCAAGCTGAGGACTCGCC
NONE
Os.56655.1.S1_at--880--3331NONE
CACGGCTCGACATCAACGAGTCGGT
NONE
Os.56655.1.S1_at--899--1451NONE
AGAAGAGCGAACTCACTCACGCGTC
NONE
Os.56655.1.S1_at--716--6411NONE
GATCTCAGTGCGCAGTTTACAGTAG
NONE
Os.56655.1.S1_at--545--6871NONE
GTATATAGAACAGTTTCCCACCCAC
NONE
Target Sequence 
GCGCCGAGCGCCGACAGCAAGAAGAGCACCGGCGTCTTCCTCCGCGATGACAAGTCTTCGACCAAGGAGGAGAAGGACAA
GGCCGGCGGCGACGACAAGAAGAAGATCGAGGCCGAGAGCAAGGCGATGAAGCAGGAGGACAAGAAGGAGTCGACGGCAT
CGTCGGACTACTCGACCAAGAGCGGCGTCGAGACCAGGGATGCCGTCATCCCGAGCGAGCCCACCACGCCCGCCACCGCC
GCCACGACCACGTCGACTTCGACCAGCGATAAGGTGGGCAGCCTCGCGTGGCAGCTCACGCAGGTCAAGCTGAGGACTCG
CCGCCCCAGCGAGGCGAGAGAGAGCGACATCTCCACCAAGAGCGCCACCGCCTAAGGGACAACCACCACCACGGCTCGAC
ATCAACGAGTCGGTGGAGGAGAACCAGGAGATCAAGGAAAGAAGAAGAGCGAACTCACTCACGCGTCGAAGGCCGGGATA
GAAGATCTCAGTGCGCAGTTTACAGTAGGGAAGGGCGACCGTGGAGATGAGTTGAGCGCGAGAGTAAGAACGAGTGTATA
TAGAACAGTTTCCCACCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis