Browse Element(s) Details


Os.10592.1.S1_at

Description gb:AU096721
DB_XREF= gi:8859403
DB_XREF=AU096721
CLONE=S14830
TID=Os.10592.1
CNT=17
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative polyketide synthase (OJ1523_A02.4), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g401947/11DSBA-like thioredoxin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40160OsAffx.25217.1.S1_x_at11/113+22269012..22276271transposon protein, putative, unclassified
LOC_Os03g40160OsAffx.25217.2.S1_x_at4/113+22269012..22276271transposon protein, putative, unclassified
LOC_Os03g40170Os.30983.1.S1_at11/113+22286936..22289703Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g40170Os.30983.2.S1_x_at11/113+22286936..22289703Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g40180Os.11582.1.S1_s_at11/113+22291275..2229292760S ribosomal protein L15, putative, expressed
LOC_Os03g40180Os.11582.2.S1_at11/113+22291275..2229292760S ribosomal protein L15, putative, expressed
LOC_Os03g40194OsAffx.13260.2.S1_at11/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194OsAffx.13260.1.S1_s_at11/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194Os.10592.1.S1_at7/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194Os.8905.1.S1_at2/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40210OsAffx.25447.1.S1_at10/113+22307265..22309410hypothetical protein
LOC_Os03g40220OsAffx.10237.1.S1_at1/113+22312331..22314326transposon protein, putative, unclassified
LOC_Os03g40220OsAffx.16318.1.S1_x_at1/113+22312331..22314326transposon protein, putative, unclassified
LOC_Os03g40230OsAffx.25448.1.S1_at11/113+22315656..22316323hypothetical protein
LOC_Os03g40240NANA3+22320341..22321433hypothetical protein
LOC_Os03g40250Os.29772.3.S1_x_at11/113+22323928..22325844Leucine Rich Repeat family protein, expressed
LOC_Os03g40250Os.29772.1.S1_at10/113+22323928..22325844Leucine Rich Repeat family protein, expressed
LOC_Os03g40260Os.52337.1.S1_at11/113+22328243..22334802regulator of chromosome condensation, putative, expressed
LOC_Os03g40260OsAffx.22679.1.S1_x_at11/113+22328243..22334802regulator of chromosome condensation, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10592.1.S1_at--1011--271Chr03:22297360..22297384 (25 bp)
ATAGGCTCATAACTCTTGCTGGGCA
LOC_Os03g40194
Os.10592.1.S1_at--408--351Chr03:22297352..22297376 (25 bp)
ATAACTCTTGCTGGGCACCAAGGTT
LOC_Os03g40194
Os.10592.1.S1_at--985--3931Chr03:22296410..22296433 (24 bp)
CGGCAAGTTCTGCTGGATGCTGCAA
LOC_Os03g40194
Os.10592.1.S1_at--444--5471Chr03:22296221..22296245 (25 bp)
GAACTCAACAAATATTCCTCTGGAA
LOC_Os03g40194
Os.10592.1.S1_at--459--8251Chr03:22296201..22296225 (25 bp)
TGGAATTTCTGGTGTTCCTCACTTT
LOC_Os03g40194
Os.10592.1.S1_at--126--811Chr03:22296043..22296067 (25 bp)
ATGGGAAATTTCAGCTCAGCGGCGG
LOC_Os03g40194
Os.10592.1.S1_at--902--3811Chr03:22296013..22296037 (25 bp)
CTCCAAATGCATTCACAAGGGCTTT
LOC_Os03g40194
Os.10592.1.S1_at--794--4831Chr03:22295966..22295990 (25 bp)
GCTCAATGATTGTGCGTGTGGGAAA
NONE
Os.10592.1.S1_at--381--4751Chr03:22295873..22295897 (25 bp)
GCTGATATATGGTTGCTACACGGTA
NONE
Os.10592.1.S1_at--667--4831Chr03:22295859..22295883 (25 bp)
GCTACACGGTAGGTACTTGAATCTA
NONE
Os.10592.1.S1_at--714--2111Chr03:22295753..22295777 (25 bp)
ACATGTCCTAAGTGTATGCACGCAC
NONE
Target Sequence 
ATAGGCTCATAACTCTTGCTGGGCACCAAGGTTATGACAAACAAAGTGCTCTTGTTGAAGAATTATTCCAAAGTTACTTT
TGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCTGCAAGAAAGGTGGGCATAGAAGGAGCAGAAGAACT
TCTTCAAGATTCTAACAAAGGAGTCGATGAGGTCAAGGAAGAACTCAACAAATATTCCTCTGGAATTTCTGGTGTTCCTC
ACTTTGTGATAAATGGGAAATTTCAGCTCAGCGGCGGCCAGCCTCCAAATGCATTCACAAGGGCTTTTGATGTTGCTGCA
AAAGATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTANAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGCTGG
TTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATA
ATATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGTGTATG
CACGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis