Browse Element(s) Details


Os.30983.2.S1_x_at

Description gb:NM_184864.1
DB_XREF= gi:34896817
TID=Os.30983.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.30983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1523_A02.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1523_A02.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4017011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40150Os.33624.3.S1_x_at11/113+22264996..22268465hypothetical protein
LOC_Os03g40150OsAffx.25216.1.S1_x_at7/113+22264996..22268465hypothetical protein
LOC_Os03g40160OsAffx.25217.1.S1_x_at11/113+22269012..22276271transposon protein, putative, unclassified
LOC_Os03g40160OsAffx.25217.2.S1_x_at4/113+22269012..22276271transposon protein, putative, unclassified
LOC_Os03g40170Os.30983.1.S1_at11/113+22286936..22289703Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g40170Os.30983.2.S1_x_at11/113+22286936..22289703Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g40180Os.11582.1.S1_s_at11/113+22291275..2229292760S ribosomal protein L15, putative, expressed
LOC_Os03g40180Os.11582.2.S1_at11/113+22291275..2229292760S ribosomal protein L15, putative, expressed
LOC_Os03g40194OsAffx.13260.2.S1_at11/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194OsAffx.13260.1.S1_s_at11/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194Os.10592.1.S1_at7/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194Os.8905.1.S1_at2/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40210OsAffx.25447.1.S1_at10/113+22307265..22309410hypothetical protein
LOC_Os03g40220OsAffx.10237.1.S1_at1/113+22312331..22314326transposon protein, putative, unclassified
LOC_Os03g40220OsAffx.16318.1.S1_x_at1/113+22312331..22314326transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30983.2.S1_x_at--805--7951Chr03:22288398..22288422 (25 bp)
GGATACACGAGTTGCGCCTGATCAA
LOC_Os03g40170
Os.30983.2.S1_x_at--1111--5371Chr03:22288424..22288448 (25 bp)
GAAGAATTAGTCTCACTGCTCCATC
LOC_Os03g40170
Os.30983.2.S1_x_at--898--6571Chr03:22288456..22288480 (25 bp)
GATTCGATGGATACTTTCCGCTGCC
LOC_Os03g40170
Os.30983.2.S1_x_at--511--10831Chr03:22288497..22288521 (25 bp)
TTGGGATGATCCTCGATTCAGCCAT
LOC_Os03g40170
Os.30983.2.S1_x_at--574--9871Chr03:22288524..22288548 (25 bp)
TACAGAGCATCACCCACTAGTAGGA
LOC_Os03g40170
Os.30983.2.S1_x_at--209--4891Chr03:22288561..22288585 (25 bp)
GCTTCAACAACGTTCCACAAATCTG
LOC_Os03g40170
Os.30983.2.S1_x_at--483--711Chr03:22288643..22288667 (25 bp)
ATGATGGGCCTTCCACAGCTGTGAA
LOC_Os03g40170
Os.30983.2.S1_x_at--342--7031Chr03:22288726..22288750 (25 bp)
GTACATGATCTTTTCGACTTTGAGG
LOC_Os03g40170
Os.30983.2.S1_x_at--190--8111Chr03:22288749..22288773 (25 bp)
GGACGACTGTCCAATATGCCTAGAA
LOC_Os03g40170
Os.30983.2.S1_x_at--797--1351Chr03:22289257..22289281 (25 bp)
AGAGAAGTCAAGCTTGCCCAGTCTG
LOC_Os03g40170
Os.30983.2.S1_x_at--39--2251Chr03:22289599..22289623 (25 bp)
AAATTGGTAGCTTGTGTCAATCCAC
LOC_Os03g40170
Target Sequence 
GGATACACGAGTTGCGCCTGATCAAGGAAGAATTAGTCTCACTGCTCCATCACAGCATGATTCGATGGATACTTTCCGCT
GCCCGCCAAGGCCCTTGCCTTGGGATGATCCTCGATTCAGCCATCATACAGAGCATCACCCACTAGTAGGAGGACATGAC
AAAGCTTCAACAACGTTCCACAAATCTGGTAGCCTTGGAGAAAGCAAGAATGCTGATAGCATATCTAATTCCAAAGCTGT
CAAGGATGATGGGCCTTCCACAGCTGTGAAGGATGATGGATCATCAGTAAAACACCATTCAGATGGTCTGCACATTGGCA
AAGAGCAAGTACATGATCTTTTCGACTTTGAGGACGACTGTCCAATATGCCTAGAAGAGTATGATTATGAGAATCCAAAG
ATGACATTACAATGCAACCACAATTTCCATCTTTGTTGTATTTATGAGTGGATGGAGAGAAGTCAAGCTTGCCCAGTCTG
CTCAAAGAAAAAATTGGTAGCTTGTGTCAATCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30983.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis