Browse Element(s) Details


OsAffx.30115.1.S1_at

Description tigr:9637.m02833
TID=OsAffx.30115.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g323509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32330Os.8570.4.S1_at11/119+19302495..19304588expressed protein
LOC_Os09g32340OsAffx.17983.1.S1_at11/119+19319574..19319945hypothetical protein
LOC_Os09g32350OsAffx.30115.1.S1_at9/119+19320884..19322717hypothetical protein
LOC_Os09g32360Os.53975.1.S1_at11/119+19329487..19331512expressed protein
LOC_Os09g32370OsAffx.30116.1.S1_at11/119+19332536..19334665expressed protein
LOC_Os09g32380Os.52462.1.S1_at11/119+19335293..19339062hAT family dimerisation domain containing protein, expressed
LOC_Os09g32390Os.35344.18.S1_x_at11/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390Os.35344.3.S1_x_at9/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390OsAffx.22940.5.S1_x_at3/119+19341066..19347113transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30115.1.S1_at--1081--4151Chr09:19320921..19320945 (25 bp)
CGCCGATCAGGACCGCTTTGTCGAC
LOC_Os09g32350
OsAffx.30115.1.S1_at--1041--8611Chr09:19321173..19321197 (25 bp)
TGGTGTTCGTCGACGTCCCGCGAGA
LOC_Os09g32350
OsAffx.30115.1.S1_at--902--7971NONE
GGATCCGGGCGTGTTCTTCTGTGCT
NONE
OsAffx.30115.1.S1_at--978--8791Chr09:19321620..19321643 (24 bp)
TGTTCTTCTGTGCTCATGGCCTCTT
LOC_Os09g32350
OsAffx.30115.1.S1_at--568--8431Chr09:19321636..19321660 (25 bp)
GGCCTCTTCGCATGATCTTGTAGAT
LOC_Os09g32350
OsAffx.30115.1.S1_at--248--3471Chr09:19321682..19321706 (25 bp)
CAGGGCAATTTAGGCCGGATCCTTG
LOC_Os09g32350
OsAffx.30115.1.S1_at--574--871Chr09:19321693..19321717 (25 bp)
AGGCCGGATCCTTGTCCTAATTGTC
LOC_Os09g32350
OsAffx.30115.1.S1_at--119--3671NONE
CTTAATGGCTTGGTGGTAGCTACTT
NONE
OsAffx.30115.1.S1_at--1107--6951Chr09:19322610..19322634 (25 bp)
GTAGCTACTTGGAATTCCATAGCAT
LOC_Os09g32350
OsAffx.30115.1.S1_at--650--2351Chr09:19322637..19322661 (25 bp)
AAAGCTCATGCAGTTATTTTCAGGA
LOC_Os09g32350
OsAffx.30115.1.S1_at--518--10531Chr09:19322662..19322686 (25 bp)
TTCAGTTCAGCAAACATGGCCTTGT
LOC_Os09g32350
Target Sequence 
CGCCGATCAGGACCGCTTTGTCGACCCCGTCGCCGCCGCCGACGACCGTGGAGGCGGAGGTCTCAGCTTCGCCTTCGCCG
CCGAAGGAGGAGGTGGTGGCGGAGGCGGATGCGGAGGAGGAAGAGCCGTCGACGCCGACGTCGGAGGAGAGCAGGCTGAG
GCCGCCGGCGGTGTGCCCGCCGGCGCCGCGAAAGCCGCTGCCGCCGCGGCGGCTGGCGGCTGCGGCGGCGGGGAAGAGGA
AGTCGTCGCCGGTGGTGTTCGTCGACGTCCCGCGAGACCTCGCCGCCGTGTTCCGGTCACTGCCGCCGAAGAAGCGGATC
CGGGCGTGTTCTTCTGTGCTCATGGCCTCTTCGCATGATCTTGTAGATTTTTACGTATTTAAAAATGATCAGGGCAATTT
AGGCCGGATCCTTGTCCTAATTGTCCTTAAGAATTTTTGTAAGAAAATTGTTCTTAATGGCTTGGTGGTAGCTACTTGGA
ATTCCATAGCATCAAAAGCTCATGCAGTTATTTTCAGGATTCAGTTCAGCAAACATGGCCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis