Browse Element(s) Details


Os.46760.1.S1_at

Description gb:AK120524.1
DB_XREF= gi:37990147
TID=Os.46760.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013126M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126M04, full insert sequence.
FL= gb:AK120524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3253210/1160S ribosomal protein L32, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32490OsAffx.20169.1.S1_at8/119+19391557..19393658retrotransposon protein, putative, LINE subclass
LOC_Os09g32500Os.13485.1.S1_at10/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32500Os.8861.1.S1_x_at4/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32510Os.20775.1.S1_at11/119+19405796..19407978Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g32520OsAffx.30120.3.S1_s_at11/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32520Os.8861.1.S1_x_at7/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32526Os.11022.1.S1_at11/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526OsAffx.30120.2.S1_s_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526Os.11022.1.S1_x_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32532Os.46760.1.S1_at10/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.8861.1.S1_x_at2/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.9721.1.S1_at1/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32540OsAffx.17985.1.S1_at11/119+19424552..19430435expressed protein
LOC_Os09g32550Os.27986.1.A1_at11/119+19433295..19437299Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g32560OsAffx.30121.1.S1_at11/119+19439400..19440631hypothetical protein
LOC_Os09g32570Os.56234.1.S1_at11/119+19442812..19444429Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32580OsAffx.17986.1.S1_at11/119+19445053..19447503expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46760.1.S1_at--277--1811Chr09:19418757..19418781 (25 bp)
ACGCTGGTTGAGCTGTTTTTTGGTC
LOC_Os09g32532
Os.46760.1.S1_at--879--10351Chr09:19418741..19418765 (25 bp)
TTTTTGGTCGCGTTGTTTGTAGGAG
LOC_Os09g32532
Os.46760.1.S1_at--413--8171Chr09:19418717..19418741 (25 bp)
GGAACATTACCCTGCTTCGAGAAGT
LOC_Os09g32532
Os.46760.1.S1_at--71--5971Chr09:19418699..19418723 (25 bp)
GAGAAGTTCACCTAATCGTTGTGTA
LOC_Os09g32532
Os.46760.1.S1_at--709--171Chr09:19418674..19418698 (25 bp)
ATTTTCTCATGTAAACGTCCTTAGG
LOC_Os09g32532
Os.46760.1.S1_at--793--6531Chr09:19418650..19418674 (25 bp)
GATTTCAGTAATGAGCTGTGCTCCT
LOC_Os09g32532
Os.46760.1.S1_at--761--5891Chr09:19418638..19418662 (25 bp)
GAGCTGTGCTCCTATAATTATTTAC
LOC_Os09g32532
Os.46760.1.S1_at--1138--9651Chr09:19418620..19418644 (25 bp)
TATTTACTGTACTCGACTTACCTTT
LOC_Os09g32532
Os.46760.1.S1_at--1156--3651Chr09:19418604..19418628 (25 bp)
CTTACCTTTTCCCATGTACACTGAT
LOC_Os09g32532
Os.46760.1.S1_at--212--8751Chr09:19418590..19418614 (25 bp)
TGTACACTGATATCGGCAGTCAGAT
LOC_Os09g32532
Os.46760.1.S1_at--940--4811Chr05:1269078..1269097 (20 bp)
GCTCTCTGATGAAGCACTCAATAGA
NONE
Target Sequence 
ACGCTGGTTGAGCTGTTTTTTGGTCGCGTTGTTTGTAGGAGGAACATTACCCTGCTTCGAGAAGTTCACCTAATCGTTGT
GTAATTTTCTCATGTAAACGTCCTTAGGATTTCAGTAATGAGCTGTGCTCCTATAATTATTTACTGTACTCGACTTACCT
TTTCCCATGTACACTGATATCGGCAGTCAGATGAGAAAATTGCATGCTTTGGGCNCTATAGTTCTNNNNNNNNNCTGCTC
TCTGATGAAGCACTCAATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis