Browse Element(s) Details


OsAffx.17985.1.S1_at

Description tigr:9637.m02853
TID=OsAffx.17985.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3254011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32500Os.13485.1.S1_at10/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32500Os.8861.1.S1_x_at4/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32510Os.20775.1.S1_at11/119+19405796..19407978Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g32520OsAffx.30120.3.S1_s_at11/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32520Os.8861.1.S1_x_at7/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32526Os.11022.1.S1_at11/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526OsAffx.30120.2.S1_s_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526Os.11022.1.S1_x_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32532Os.46760.1.S1_at10/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.8861.1.S1_x_at2/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.9721.1.S1_at1/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32540OsAffx.17985.1.S1_at11/119+19424552..19430435expressed protein
LOC_Os09g32550Os.27986.1.A1_at11/119+19433295..19437299Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g32560OsAffx.30121.1.S1_at11/119+19439400..19440631hypothetical protein
LOC_Os09g32570Os.56234.1.S1_at11/119+19442812..19444429Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32580OsAffx.17986.1.S1_at11/119+19445053..19447503expressed protein
LOC_Os09g32590OsAffx.6472.1.S1_at11/119+19448704..19449267hypothetical protein
LOC_Os09g32600OsAffx.6473.1.S1_at11/119+19454454..19457078F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17985.1.S1_at--393--1391Chr09:19425192..19425216 (25 bp)
AGACCCAGCTGTCCAGGAGGGAAAC
LOC_Os09g32540
OsAffx.17985.1.S1_at--32--3251Chr09:19425168..19425192 (25 bp)
CAAGCAGAAGGAAGGCATCTCTCCC
LOC_Os09g32540
OsAffx.17985.1.S1_at--212--931Chr09:19425156..19425180 (25 bp)
AGGCATCTCTCCCACAGTAGCGAAG
LOC_Os09g32540
OsAffx.17985.1.S1_at--939--451Chr09:19425152..19425176 (25 bp)
ATCTCTCCCACAGTAGCGAAGCAGA
LOC_Os09g32540
OsAffx.17985.1.S1_at--1033--3291Chr09:19425144..19425168 (25 bp)
CACAGTAGCGAAGCAGAGTTCAGAA
LOC_Os09g32540
OsAffx.17985.1.S1_at--254--6071Chr09:19425129..19425153 (25 bp)
GAGTTCAGAAAGAGTTCATGTCCCT
LOC_Os09g32540
OsAffx.17985.1.S1_at--1127--8591Chr09:19424970..19424994 (25 bp)
TGGTGCTGATGACAACAAATTCTGG
LOC_Os09g32540
OsAffx.17985.1.S1_at--594--8951Chr09:19424961..19424985 (25 bp)
TGACAACAAATTCTGGAGCTCCCCA
LOC_Os09g32540
OsAffx.17985.1.S1_at--495--6591Chr09:19424932..19424956 (25 bp)
GATTGCCCGAGAACAATGCTGAGAA
LOC_Os09g32540
OsAffx.17985.1.S1_at--544--1411Chr09:19424908..19424932 (25 bp)
AGAAATCCAAAGCAAGGAAGCAGCC
LOC_Os09g32540
OsAffx.17985.1.S1_at--60--9871Chr09:19424798..19424822 (25 bp)
TACACCATGTGCATGTTGCATCTTG
LOC_Os09g32540
Target Sequence 
AGACCCAGCTGTCCAGGAGGGAAACAAGCAGAAGGAAGGCATCTCTCCCACAGTAGCGAAGCAGAGTTCAGAAAGAGTTC
ATGTCCCTCTCAAGGTGCTCCTAGCCGAGGCGAGTGTGGAGACGAAAGAAAAGAAAACCACTGCCAAGGAGCGTGTTTTG
TCATTCAGGCGCCGAGTATCGAAGGACGACTCATCGTCGGCCAAGTCCGGGTCCCCAAAACCTGGTGCTGATGACAACAA
ATTCTGGAGCTCCCCAGCAAGATTGCCCGAGAACAATGCTGAGAAGAAATCCAAAGCAAGGAAGCAGCCATGGATGCCGT
TCATTTGCTGTCACTCGGTGCACTAAGCCTGCCATCCATCTTCAGCAGCACAAAGCTTCTCCAAGCTGCTGCTATACACC
ATGTGCATGTTGCATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis