Browse Element(s) Details


Os.27986.1.A1_at

Description gb:AK102600.1
DB_XREF= gi:32987809
TID=Os.27986.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27986 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033098L04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098L04, full insert sequence.
FL= gb:AK102600.1 gb:AK121879.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3255011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32520OsAffx.30120.3.S1_s_at11/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32520Os.8861.1.S1_x_at7/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32526Os.11022.1.S1_at11/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526OsAffx.30120.2.S1_s_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526Os.11022.1.S1_x_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32532Os.46760.1.S1_at10/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.8861.1.S1_x_at2/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.9721.1.S1_at1/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32540OsAffx.17985.1.S1_at11/119+19424552..19430435expressed protein
LOC_Os09g32550Os.27986.1.A1_at11/119+19433295..19437299Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g32560OsAffx.30121.1.S1_at11/119+19439400..19440631hypothetical protein
LOC_Os09g32570Os.56234.1.S1_at11/119+19442812..19444429Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32580OsAffx.17986.1.S1_at11/119+19445053..19447503expressed protein
LOC_Os09g32590OsAffx.6472.1.S1_at11/119+19448704..19449267hypothetical protein
LOC_Os09g32600OsAffx.6473.1.S1_at11/119+19454454..19457078F-box domain containing protein
LOC_Os09g32610Os.8515.1.A1_at1/119+19458688..19462253expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27986.1.A1_at--463--1391Chr09:19435800..19435824 (25 bp)
AGACCGGTGCGACGTGCTACTTCAA
LOC_Os09g32550
Os.27986.1.A1_at--991--3791Chr09:19435771..19435795 (25 bp)
CTCGCCGAGGAGACCACCAAAGATC
LOC_Os09g32550
Os.27986.1.A1_at--1056--6431Chr09:19433780..19433804 (25 bp)
GATCATGCAAATTCCACAGTTCTTT
LOC_Os09g32550
Os.27986.1.A1_at--241--3671Chr09:19433759..19433783 (25 bp)
CTTTGGACTAACTGATTGCATGGGA
LOC_Os09g32550
Os.27986.1.A1_at--1018--3851Chr09:19433578..19433602 (25 bp)
CTGTTTTTCTGTGGCTTAATCAGTA
LOC_Os09g32550
Os.27986.1.A1_at--266--791Chr09:19433494..19433518 (25 bp)
ATGGGCCTCACATGGGCCATACATG
LOC_Os09g32550
Os.27986.1.A1_at--217--4471Chr09:19433458..19433482 (25 bp)
GCCTCTGCAACCGAGCTAGGAGTAG
LOC_Os09g32550
Os.27986.1.A1_at--880--971Chr09:19433441..19433465 (25 bp)
AGGAGTAGCAGTTCTGCCACACGGC
LOC_Os09g32550
Os.27986.1.A1_at--960--1911Chr09:19433421..19433445 (25 bp)
ACGGCCCGTCTACAAGGATGGTGTT
LOC_Os09g32550
Os.27986.1.A1_at--991--8611Chr09:19433403..19433427 (25 bp)
TGGTGTTGTACTGTGTCACTCATCC
LOC_Os09g32550
Os.27986.1.A1_at--67--291Chr09:19433343..19433367 (25 bp)
ATAGTTTGCACATCATCTACAGAAA
LOC_Os09g32550
Target Sequence 
AGACCGGTGCGACGTGCTACTTCAACAACCTCGCCGAGGAGACCACCAAAGATCCAAGCCACGGATCATGCAAATTCCAC
AGTTCTTTGGACTAACTGATTGCATGGGAGGACAATATGAAAATGAACAACATTGTTCTCGATTTATTTTATTTTTGTCA
AACCTGATTAGATTTAGACCCAGGAAGTTAGGTAGTTGAGTACTTCTGTATCTGCTCATCGTCTACNAAACCTGTGAACT
GTGATGTAACAGNGAAATTTGCCGTCTGTTTTTCTGTGGCTTAATCAGTAGAAGAAGATCTGTGGCTTAATTAGAACGAA
ATTTTCAGAACTGAACCNCCTGCCTCTGCATGGGCCTCACATGGGCCATACATGGGCCTGCACCTGCCTCTGCAACCGAG
CTAGGAGTAGCAGTTCTGCCACACGGCCCGTCTACAAGGATGGTGTTGTACTGTGTCACTCATCCTTCGAGTTTTAGTTT
TTTTTTTTTGTAATATCTTTTAATAGTTTGCACATCATCTACAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27986.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis