Browse Element(s) Details


OsAffx.30120.3.S1_s_at

Description tigr:9637.m02851
TID=OsAffx.30120.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal protein L32
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3252011/1160S ribosomal protein L32, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32480NANA9+19388981..19390264hypothetical protein
LOC_Os09g32490OsAffx.20169.1.S1_at8/119+19391557..19393658retrotransposon protein, putative, LINE subclass
LOC_Os09g32500Os.13485.1.S1_at10/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32500Os.8861.1.S1_x_at4/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32510Os.20775.1.S1_at11/119+19405796..19407978Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g32520OsAffx.30120.3.S1_s_at11/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32520Os.8861.1.S1_x_at7/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32526Os.11022.1.S1_at11/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526OsAffx.30120.2.S1_s_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526Os.11022.1.S1_x_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32532Os.46760.1.S1_at10/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.8861.1.S1_x_at2/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.9721.1.S1_at1/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32540OsAffx.17985.1.S1_at11/119+19424552..19430435expressed protein
LOC_Os09g32550Os.27986.1.A1_at11/119+19433295..19437299Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30120.3.S1_s_at--132--9951Chr09:19413001..19413025 (25 bp)
TACGCAGCCAGGAGGATGAGTAGTT
LOC_Os09g32520
OsAffx.30120.3.S1_s_at--596--3371Chr09:19412997..19413021 (25 bp)
CAGCCAGGAGGATGAGTAGTTATTT
LOC_Os09g32520
OsAffx.30120.3.S1_s_at--106--3491Chr09:19412906..19412930 (25 bp)
CAGGATCCGAATATTCTGAGAGCAA
LOC_Os09g32520
OsAffx.30120.3.S1_s_at--950--6371Chr09:19412903..19412927 (25 bp)
GATCCGAATATTCTGAGAGCAATTT
LOC_Os09g32520
OsAffx.30120.3.S1_s_at--941--1351Chr09:19412888..19412912 (25 bp)
AGAGCAATTTGCTATCTGGAATTAT
LOC_Os09g32520
OsAffx.30120.3.S1_s_at--752--4871Chr09:19412878..19412902 (25 bp)
GCTATCTGGAATTATTTGTGACTCT
LOC_Os09g32520
OsAffx.30120.3.S1_s_at--127--9471Chr09:19412874..19412898 (25 bp)
TCTGGAATTATTTGTGACTCTGGCA
LOC_Os09g32520
OsAffx.30120.3.S1_s_at--952--5211Chr09:19412870..19412894 (25 bp)
GAATTATTTGTGACTCTGGCAATGT
LOC_Os09g32520
OsAffx.30120.3.S1_s_at--1000--211Chr09:19412865..19412889 (25 bp)
ATTTGTGACTCTGGCAATGTATGAT
LOC_Os09g32520
OsAffx.30120.3.S1_s_at--1044--5711Chr09:19412859..19412883 (25 bp)
GACTCTGGCAATGTATGATTGCCAT
LOC_Os09g32520
OsAffx.30120.3.S1_s_at--326--731Chr09:19412845..19412869 (25 bp)
ATGATTGCCATATTACTATTTTGAG
LOC_Os09g32520
Target Sequence 
TACGCAGCCAGGAGGATGAGTAGTTATTTTGGACTTGGTTTTTGCCTGCAGTAGACTTGCACATCATGAATATTGTTCTA
CGTATTTGTTTACATCAGGATCCGAATATTCTGAGAGCAATTTGCTATCTGGAATTATTTGTGACTCTGGCAATGTATGA
TTGCCATATTACTATTTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30120.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis