Browse Element(s) Details


OsAffx.30121.1.S1_at

Description tigr:9637.m02855
TID=OsAffx.30121.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 00849.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3256011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32526Os.11022.1.S1_at11/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526OsAffx.30120.2.S1_s_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526Os.11022.1.S1_x_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32532Os.46760.1.S1_at10/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.8861.1.S1_x_at2/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.9721.1.S1_at1/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32540OsAffx.17985.1.S1_at11/119+19424552..19430435expressed protein
LOC_Os09g32550Os.27986.1.A1_at11/119+19433295..19437299Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g32560OsAffx.30121.1.S1_at11/119+19439400..19440631hypothetical protein
LOC_Os09g32570Os.56234.1.S1_at11/119+19442812..19444429Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32580OsAffx.17986.1.S1_at11/119+19445053..19447503expressed protein
LOC_Os09g32590OsAffx.6472.1.S1_at11/119+19448704..19449267hypothetical protein
LOC_Os09g32600OsAffx.6473.1.S1_at11/119+19454454..19457078F-box domain containing protein
LOC_Os09g32610Os.8515.1.A1_at1/119+19458688..19462253expressed protein
LOC_Os09g32620NANA9+19464287..19465759Chloroplastic quinone-oxidoreductase homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004730molecular_functionpseudouridylate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30121.1.S1_at--1104--10571Chr09:19440576..19440600 (25 bp)
TTCTCTCTTGCCTGCTGAGCGCGAG
LOC_Os09g32560
OsAffx.30121.1.S1_at--979--5871Chr09:19440554..19440578 (25 bp)
GAGCGCGAGGCTGTACTGGACTGCA
LOC_Os09g32560
OsAffx.30121.1.S1_at--552--3871Chr09:19440544..19440568 (25 bp)
CTGTACTGGACTGCAGGCGAGCAGA
LOC_Os09g32560
OsAffx.30121.1.S1_at--1076--7671Chr09:19440112..19440135 (24 bp)
GGGTTCATTCCGAGTGCTCTGATCA
LOC_Os09g32560
OsAffx.30121.1.S1_at--1133--8951Chr09:19440075..19440099 (25 bp)
TGAAACTACTAAGAGCCAGAAGCAT
LOC_Os09g32560
OsAffx.30121.1.S1_at--732--6591Chr09:19439863..19439887 (25 bp)
GATTGAGAAGGCCTGTCATCCACAA
LOC_Os09g32560
OsAffx.30121.1.S1_at--609--3871Chr09:19439762..19439875 (25 bp)
CTGTCATCCACAAGGATTCTGCTAT
LOC_Os09g32560
OsAffx.30121.1.S1_at--243--9871Chr09:19439738..19439762 (25 bp)
TACTTGTGCTTAACAAGCCCACGAA
LOC_Os09g32560
OsAffx.30121.1.S1_at--722--8691Chr09:19439734..19439758 (25 bp)
TGTGCTTAACAAGCCCACGAAAGTG
LOC_Os09g32560
OsAffx.30121.1.S1_at--559--2451Chr09:19439532..19439650 (25 bp)
AAAATTGGTTCATCGGCAGCGGGCG
LOC_Os09g32560
OsAffx.30121.1.S1_at--812--8571Chr09:19439527..19439550 (24 bp)
TGGTTCATCGGCAGCGGGCGTCCCT
LOC_Os09g32560
Target Sequence 
TTCTCTCTTGCCTGCTGAGCGCGAGCGCGAGGCTGTACTGGACTGCAGGCGAGCAGAGGTGGGGGAAGACGTCGGCGCCG
CGGGGGAAGCAACCGCTCCTGGAGCACCTCGAGGGAGGAGGGGAGCTCGACGGCCTCGAGCTCGCCGGCGGGGTTCATTC
CGAGTGCTCTGATCATGAGGTTTCAGTTGAAACTACTAAGAGCCAGAAGCATCATCTCAAGAAGTGGCAGAGGGCGAGAT
TAGAGATGAGATTGAGAAGGCCTGTCATCCACAAGGATTCTGCTATACTTGTGCTTAACAAGCCCACGAAAGTGCCCATG
AAGGGAAATTTGCCAGTACATAACAGCATGGATGTGCTTGCAGCAGCAGCTCTGTTATATGGAAATGAAGAAGGTTCAAA
ATTGGTTCATCGGCAGCGGGCGTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis