Browse Element(s) Details


OsAffx.8109.1.S1_at

Description tigr:9638.m02483
TID=OsAffx.8109.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2915011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29100OsAffx.20327.1.S1_at11/1110+14837382..14838491BTB/POZ domain containing protein
LOC_Os10g29110Os.46820.1.S1_at10/1110+14839923..14841488BTB/POZ domain containing protein, expressed
LOC_Os10g29120OsAffx.30584.2.S1_at10/1110+14842175..14843661BTB/POZ domain containing protein
LOC_Os10g29130OsAffx.30582.1.S1_s_at10/1110+14847117..14847476hypothetical protein
LOC_Os10g29150OsAffx.8109.1.S1_at11/1110+14853400..14854572BTB/POZ domain containing protein, expressed
LOC_Os10g29159OsAffx.10196.1.S1_x_at1/1110+14857358..14857600hypothetical protein
LOC_Os10g29170Os.46399.1.A1_at10/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed
LOC_Os10g29170OsAffx.15781.5.S1_x_at3/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed
LOC_Os10g29170OsAffx.15781.4.S1_x_at2/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed
LOC_Os10g29180Os.46505.1.S1_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.3.S1_x_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.2.S1_x_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.2.S1_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29190Os.46819.2.S1_x_at1/1110+14875669..14876711BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8109.1.S1_at--583--10591Chr10:14853876..14853900 (25 bp)
TTCGAGGCCGGTGGCGAGACTTTTA
LOC_Os10g29150
OsAffx.8109.1.S1_at--704--2911Chr10:14853786..14853810 (25 bp)
AAGGAGAGCGACACCACGGTGGTCA
LOC_Os10g29150
OsAffx.8109.1.S1_at--191--3311Chr10:14853740..14853764 (25 bp)
CACAAGTGTTTAGGGCCTTGCTCTT
LOC_Os10g29150
OsAffx.8109.1.S1_at--190--6191Chr10:14853678..14853702 (25 bp)
GAGGACGAGTATGCCATGTGCCAGC
LOC_Os10g29150
OsAffx.8109.1.S1_at--1081--10111Chr10:14853590..14853614 (25 bp)
TATGCAGCTACATCGGTGTGGGCAC
LOC_Os10g29150
OsAffx.8109.1.S1_at--95--8251Chr10:14853570..14853594 (25 bp)
GGCACGGTGACGACTATACTGGAGT
LOC_Os10g29150
OsAffx.8109.1.S1_at--771--8031Chr10:14853550..14853574 (25 bp)
GGAGTTGGCCGAGCAACACAATTGT
LOC_Os10g29150
OsAffx.8109.1.S1_at--110--4891Chr10:14853506..14853530 (25 bp)
GCTTTGATTTTCTCAGCTCTCAGGA
LOC_Os10g29150
OsAffx.8109.1.S1_at--317--5251Chr10:14853481..14853505 (25 bp)
GAATCTGAAAGCTGTCACGGCCGGT
LOC_Os10g29150
OsAffx.8109.1.S1_at--314--5931Chr10:14853447..14853471 (25 bp)
GAGCATTTGAGCAGGAACTGCCCTT
LOC_Os10g29150
OsAffx.8109.1.S1_at--486--2551Chr10:14853432..14853456 (25 bp)
AACTGCCCTTCCCTTGTGAATGAGT
LOC_Os10g29150
Target Sequence 
TTCGAGGCCGGTGGCGAGACTTTTACCGCTCACCGGTGCGTGCTCGCGGCCCGGTCACCGGTCTTCAGCGCGGAGCTGTT
TGGATCAATGAAGGAGAGCGACACCACGGTGGTCATCCGCATCGACGACATGGAGGCACAAGTGTTTAGGGCCTTGCTCT
TCTTCGTGTACACCGACTCGTTGCCGGAGACGAAGAAGGAGGACGAGTATGCCATGTGCCAGCATCTACTCGTCGCGGCG
GACAGGTACAACATGGAGAGGCTCAAGCTAATGTGCGAGGAGAGGCTATGCAGCTACATCGGTGTGGGCACGGTGACGAC
TATACTGGAGTTGGCCGAGCAACACAATTGTGATGGCCTAAAGAAAGCATGCTTTGATTTTCTCAGCTCTCAGGAGAATC
TGAAAGCTGTCACGGCCGGTGAGGGATTGGAGCATTTGAGCAGGAACTGCCCTTCCCTTGTGAATGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis