Browse Element(s) Details


Os.57299.1.S1_at

Description gb:AK111261.1
DB_XREF= gi:32996470
TID=Os.57299.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.57299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-F01, full insert sequence.
FL= gb:AK111261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g295309/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29490OsAffx.22848.3.S1_x_at11/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_at2/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_x_at1/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29502Os.46514.1.S1_at10/1110+14997293..15000942expressed protein
LOC_Os10g29502Os.46514.2.S1_x_at6/1110+14997293..15000942expressed protein
LOC_Os10g29502Os.46514.2.S1_at1/1110+14997293..15000942expressed protein
LOC_Os10g29514Os.12052.1.S1_at11/1110+15001215..15006732expressed protein
LOC_Os10g29514Os.46514.2.S1_x_at5/1110+15001215..15006732expressed protein
LOC_Os10g29514OsAffx.21636.1.S1_x_at2/1110+15001215..15006732expressed protein
LOC_Os10g29530Os.26783.1.S1_at11/1110+15008816..15011868expressed protein
LOC_Os10g29530Os.26783.2.S1_x_at10/1110+15008816..15011868expressed protein
LOC_Os10g29530Os.57299.1.S1_at9/1110+15008816..15011868expressed protein
LOC_Os10g29540Os.46677.1.S1_at11/1110+15012493..15021359EDR1, putative, expressed
LOC_Os10g29560Os.26516.1.S2_s_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29560Os.26516.1.S1_a_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29560Os.5321.1.S1_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57299.1.S1_at--879--7371Chr10:15009312..15009336 (25 bp)
GTGAGCGCGCGCTCAACCTGTGAAT
LOC_Os10g29530
Os.57299.1.S1_at--843--4151Chr10:15009317..15009341 (25 bp)
CGCGCGCTCAACCTGTGAATCTGTG
LOC_Os10g29530
Os.57299.1.S1_at--914--5831Chr10:15009464..15009488 (25 bp)
GACCATCTAATTGTGTACAGTGGAT
LOC_Os10g29530
Os.57299.1.S1_at--885--10831Chr10:15009474..15009498 (25 bp)
TTGTGTACAGTGGATGTCTCCTTTA
LOC_Os10g29530
Os.57299.1.S1_at--952--7691Chr10:15009530..15009554 (25 bp)
GGGTAATCTCCAGTGATGTCTTTTT
LOC_Os10g29530
Os.57299.1.S1_at--920--751Chr10:15009545..15009569 (25 bp)
ATGTCTTTTTCATGCAAGGTTGGGA
LOC_Os10g29530
Os.57299.1.S1_at--850--6431Chr10:15009580..15009604 (25 bp)
GATCATGTCTATAAATGCTGTTCAT
LOC_Os10g29530
Os.57299.1.S1_at--676--4731NONE
GCTGTTCATTTTGTGGCATTATGTA
NONE
Os.57299.1.S1_at--183--1231Chr10:15009625..15009649 (25 bp)
AGTTCATAAATTCAAGCCATCTGAA
LOC_Os10g29530
Os.57299.1.S1_at--703--1691Chr10:15009639..15009663 (25 bp)
AGCCATCTGAACGATTTTAGTCTTG
LOC_Os10g29530
Os.57299.1.S1_at--1118--2971NONE
AATGTGGTTAGAATGTCTCCTAGAA
NONE
Target Sequence 
GTGAGCGCGCGCTCAACCTGTGAATCTGTGATGNGATGCCATTATTTTTGNGGTAGCTGTAAATGAGAAAATAAGTAGTA
TGTCTGGTGTCNGTAGGAGACACCAATTGGCACGTCNAATTCTACNTGAAGACGATANANTTTGAGTANACTGACCATCT
AATTGTGTACAGTGGATGTCTCCTTTANCTATTGCTAAATGATATTTTGGATTGGAATGGGTAATCTCCAGTGATGTCTT
TTTCATGCAAGGTTGGGATGGATATTAAGATCATGTCTATAAATGCTGTTCATTTTGTGGCATTATGTAGGATAGTTCAT
AAATTCAAGCCATCTGAACGATTTTAGTCTTGGAAATTATATGTCCAGATTGAATATAAAATTATAAATGTGGTTAGAAT
GTCTCCTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis