Browse Element(s) Details


Os.46677.1.S1_at

Description gb:AK121718.1
DB_XREF= gi:37991341
TID=Os.46677.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46677 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative enhanced disease resistance protein (OSJNBa0073D04.42), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079M14, full insert sequence.
FL= gb:AK121718.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2954011/11EDR1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29490OsAffx.22848.3.S1_x_at11/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_at2/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_x_at1/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29502Os.46514.1.S1_at10/1110+14997293..15000942expressed protein
LOC_Os10g29502Os.46514.2.S1_x_at6/1110+14997293..15000942expressed protein
LOC_Os10g29502Os.46514.2.S1_at1/1110+14997293..15000942expressed protein
LOC_Os10g29514Os.12052.1.S1_at11/1110+15001215..15006732expressed protein
LOC_Os10g29514Os.46514.2.S1_x_at5/1110+15001215..15006732expressed protein
LOC_Os10g29514OsAffx.21636.1.S1_x_at2/1110+15001215..15006732expressed protein
LOC_Os10g29530Os.26783.1.S1_at11/1110+15008816..15011868expressed protein
LOC_Os10g29530Os.26783.2.S1_x_at10/1110+15008816..15011868expressed protein
LOC_Os10g29530Os.57299.1.S1_at9/1110+15008816..15011868expressed protein
LOC_Os10g29540Os.46677.1.S1_at11/1110+15012493..15021359EDR1, putative, expressed
LOC_Os10g29560Os.26516.1.S2_s_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29560Os.26516.1.S1_a_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29560Os.5321.1.S1_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29570OsAffx.20316.1.S1_at10/1110+15040381..15041796expressed protein
LOC_Os10g29580NANA10+15045228..15045807expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0006952biological_processdefense response
GO:0008219biological_processcell death
GO:0009414biological_processresponse to water deprivation
GO:0009621biological_processresponse to pathogenic fungi
GO:0009723biological_processresponse to ethylene stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46677.1.S1_at--874--5031Chr10:15012983..15013151 (25 bp)
GCAGAAGGATCCAAACTTGCGCCCT
LOC_Os10g29540
Os.46677.1.S1_at--679--7571Chr10:15012887..15012911 (25 bp)
GGGCTCCTATGTACCGCAAGAAATA
LOC_Os10g29540
Os.46677.1.S1_at--248--7771Chr10:15012852..15012876 (25 bp)
GGTGAAACTCTACCCATGAGGTCGT
LOC_Os10g29540
Os.46677.1.S1_at--280--8891Chr10:15012836..15012860 (25 bp)
TGAGGTCGTCATACAGCAACTGTGA
LOC_Os10g29540
Os.46677.1.S1_at--216--6551Chr10:15012796..15012820 (25 bp)
GATTTTGCCGTTACATTTGGGCTCA
LOC_Os10g29540
Os.46677.1.S1_at--765--8611Chr10:15012779..15012803 (25 bp)
TGGGCTCAATAGTCTGCAAAGGCAT
LOC_Os10g29540
Os.46677.1.S1_at--274--4991Chr10:15012758..15012782 (25 bp)
GCATGGCTTGGTTTAGAGCCCCAGT
LOC_Os10g29540
Os.46677.1.S1_at--220--3451Chr10:15012737..15012761 (25 bp)
CAGTTCCTGTCCAGATAGCAGTCAT
LOC_Os10g29540
Os.46677.1.S1_at--440--5031Chr10:15012720..15012744 (25 bp)
GCAGTCATCCTGCTGTTGCAAGATA
LOC_Os10g29540
Os.46677.1.S1_at--810--9691Chr10:15012630..15012654 (25 bp)
TCAAATGTCACCTGTTTCCTTTTTC
LOC_Os10g29540
Os.46677.1.S1_at--646--7171Chr10:15012574..15012598 (25 bp)
GTCTGAACTGTGGAGAATCCCCAAA
LOC_Os10g29540
Target Sequence 
GCAGAAGGATCCAAACTTGCGCCCTTCTTTTAGCCAGCTAACTAGCTATCTGAATACATTGCAAAGGCNAGTAATCCCTT
GTCATCAGGAGACAGCGGGCTCCTATGTACCGCAAGAAATATCGTTATACCGGTGAAACTCTACCCATGAGGTCGTCATA
CAGCAACTGTGAATAAAGAGCAATTGTGATTTTGCCGTTACATTTGGGCTCAATAGTCTGCAAAGGCATGGCTTGGTTTA
GAGCCCCAGTTCCTGTCCAGATAGCAGTCATCCTGCTGTTGCAAGATAAAAAGGCTTGGCAGCGGAGTATGTGTACAGTA
TAGGTCGATCAGATAAACAGTCGGAGAAGAAAATCAAATGTCACCTGTTTCCTTTTTCTTTTTCATGTGCCCCCCATCCC
CATTGTNTCGTCTGAACTGTGGAGAATCCCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46677.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis