Browse Element(s) Details


OsAffx.20316.1.S1_at

Description tigr:9638.m02528
TID=OsAffx.20316.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2957010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29540Os.46677.1.S1_at11/1110+15012493..15021359EDR1, putative, expressed
LOC_Os10g29560Os.26516.1.S2_s_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29560Os.26516.1.S1_a_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29560Os.5321.1.S1_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29570OsAffx.20316.1.S1_at10/1110+15040381..15041796expressed protein
LOC_Os10g29580NANA10+15045228..15045807expressed protein
LOC_Os10g29590NANA10+15047024..15049211hypothetical protein
LOC_Os10g29610OsAffx.18449.1.S1_at11/1110+15062649..15063410hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006873biological_processcell ion homeostasis
GO:0007275biological_processdevelopment
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0010226biological_processresponse to lithium ion
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20316.1.S1_at--1057--5711Chr10:15040417..15040441 (25 bp)
GACGGCACCAAGATAACGATCGGCG
LOC_Os10g29570
OsAffx.20316.1.S1_at--1115--5071Chr10:15040421..15040445 (25 bp)
GCACCAAGATAACGATCGGCGAGGC
LOC_Os10g29570
OsAffx.20316.1.S1_at--454--6191Chr10:15040657..15040681 (25 bp)
GAGGACAAGACCACGCTCGGCGACG
LOC_Os10g29570
OsAffx.20316.1.S1_at--249--7711NONE
GGGTGGAGGAAAGTTCACTACTCAA
NONE
OsAffx.20316.1.S1_at--669--5571Chr10:15041695..15041719 (25 bp)
GAAAGTTCACTACTCAAGCCGTCGA
LOC_Os10g29570
OsAffx.20316.1.S1_at--843--6751Chr10:15041699..15041723 (25 bp)
GTTCACTACTCAAGCCGTCGAGATG
LOC_Os10g29570
OsAffx.20316.1.S1_at--899--3231Chr10:15041709..15041733 (25 bp)
CAAGCCGTCGAGATGCAACACCGGT
LOC_Os10g29570
OsAffx.20316.1.S1_at--124--4011Chr10:15041714..15041738 (25 bp)
CGTCGAGATGCAACACCGGTGGGCA
LOC_Os10g29570
OsAffx.20316.1.S1_at--599--9011Chr10:15041722..15041746 (25 bp)
TGCAACACCGGTGGGCATCAACTTG
LOC_Os10g29570
OsAffx.20316.1.S1_at--142--7491Chr10:15041732..15041756 (25 bp)
GTGGGCATCAACTTGCCAACTACAT
LOC_Os10g29570
OsAffx.20316.1.S1_at--213--2511Chr10:15041741..15041765 (25 bp)
AACTTGCCAACTACATTAAATCAGA
LOC_Os10g29570
Target Sequence 
GACGGCACCAAGATAACGATCGGCGAGGCGCTGGAGGCGGCGGCGCTCTCGGCGGGAGACCAGCCGGTGGAGCCGAGCGA
CGCCGCGGCGATCGAGGCGGCGGAGGCGCGCGCGGCCGGTCGGCTGCAGGACGACGACGACGACGACGACGACGACGACG
CAGACGCCGCCGCCGCGCCGGCCGGCCTCGCCGCGCGGGCGCGTGCCGCCGCGGACGCCAACGCCCGGGCGGAGCGCGAC
GAGGACAAGACCACGCTCGGCGACGTCCTCGCGGACGCGGCGGCGAAGCTGGGCGGCGCGGACAAGGAGGTGGAGAGGGA
GGACGCGGTGCGGGTGGTCGGGGTGGAGGAAAGTTCACTACTCAAGCCGTCGAGATGCAACACCGGTGGGCATCAACTTG
CCAACTACATTAAATCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis