Browse Element(s) Details


OsAffx.18449.1.S1_at

Description tigr:9638.m02532
TID=OsAffx.18449.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2961011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29560Os.26516.1.S2_s_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29560Os.26516.1.S1_a_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29560Os.5321.1.S1_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29570OsAffx.20316.1.S1_at10/1110+15040381..15041796expressed protein
LOC_Os10g29580NANA10+15045228..15045807expressed protein
LOC_Os10g29590NANA10+15047024..15049211hypothetical protein
LOC_Os10g29610OsAffx.18449.1.S1_at11/1110+15062649..15063410hypothetical protein
LOC_Os10g29620Os.12663.1.S1_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29620Os.12663.1.S1_x_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29630OsAffx.18450.1.S1_at6/1110+15077883..15079071hypothetical protein
LOC_Os10g29640OsAffx.5031.3.S1_x_at11/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.1.S1_x_at5/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.2.S1_x_at4/1110+15081116..15081928hypothetical protein
LOC_Os10g29650Os.51357.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_x_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.23790.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18449.1.S1_at--163--9191Chr10:15062812..15062836 (25 bp)
TGCCGGCCTTTCTTGACGACCTTGA
LOC_Os10g29610
OsAffx.18449.1.S1_at--18--8431Chr10:15062816..15062840 (25 bp)
GGCCTTTCTTGACGACCTTGATCCG
LOC_Os10g29610
OsAffx.18449.1.S1_at--926--10771Chr10:15062833..15062857 (25 bp)
TTGATCCGCCGCTGTACCTTGATGA
LOC_Os10g29610
OsAffx.18449.1.S1_at--1044--4511Chr10:15062840..15062864 (25 bp)
GCCGCTGTACCTTGATGATGTCGAG
LOC_Os10g29610
OsAffx.18449.1.S1_at--680--4491Chr10:15062877..15062901 (25 bp)
GCCGGTGGGTTGTCCACCGCCATCG
LOC_Os10g29610
OsAffx.18449.1.S1_at--986--9671Chr10:15062904..15062928 (25 bp)
TCACGCCGGCTGTTCTTTGAGTCGC
LOC_Os10g29610
OsAffx.18449.1.S1_at--169--8791Chr10:15062914..15062938 (25 bp)
TGTTCTTTGAGTCGCCCGGACGGTC
LOC_Os10g29610
OsAffx.18449.1.S1_at--535--8111Chr10:15062931..15062955 (25 bp)
GGACGGTCGAACTCCATCGTGGATT
LOC_Os10g29610
OsAffx.18449.1.S1_at--48--5471Chr10:15062939..15062963 (25 bp)
GAACTCCATCGTGGATTCCGCCGAG
LOC_Os10g29610
OsAffx.18449.1.S1_at--11--2891Chr10:15063087..15063111 (25 bp)
AAGGGAGTGCGCGTGTGCGGCGACG
LOC_Os10g29610
OsAffx.18449.1.S1_at--569--1231Chr10:15063157..15063181 (25 bp)
AGTTCCTCAAGTCGATGACGGAGAT
LOC_Os10g29610
Target Sequence 
TGCCGGCCTTTCTTGACGACCTTGATCCGCCGCTGTACCTTGATGATGTCGAGGCGGAGGCCGACGCCGGTGGGTTGTCC
ACCGCCATCGCCTCACGCCGGCTGTTCTTTGAGTCGCCCGGACGGTCGAACTCCATCGTGGATTCCGCCGAGCACCCCGC
CGCCGCCGCCGCCGCCGTCGTCCCCCGCGGCAACGGAGGCGCCAGCACGTCGTCGTCGTCGTCGTCGGGGCGTCCTGCCG
CCGCGCCTAGCCGCGCGGCTGCTGCGGCGACTGGTAAGGGAGTGCGCGTGTGCGGCGACGAGCAGGCGCGGCCGGTCCCG
GTGTCGACGGCCGCGCCGCGGGAGGAGTTCCTCAAGTCGATGACGGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis