Browse Element(s) Details


Os.12663.1.S1_at

Description gb:AK106265.1
DB_XREF= gi:32991474
TID=Os.12663.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.12663 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OSJNBa0019M20.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F12, full insert sequence.
FL= gb:AK072305.1 gb:AK106265.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2962011/11Protein kinase APK1B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29590NANA10+15047024..15049211hypothetical protein
LOC_Os10g29610OsAffx.18449.1.S1_at11/1110+15062649..15063410hypothetical protein
LOC_Os10g29620Os.12663.1.S1_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29620Os.12663.1.S1_x_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29630OsAffx.18450.1.S1_at6/1110+15077883..15079071hypothetical protein
LOC_Os10g29640OsAffx.5031.3.S1_x_at11/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.1.S1_x_at5/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.2.S1_x_at4/1110+15081116..15081928hypothetical protein
LOC_Os10g29650Os.51357.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_x_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.23790.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29660Os.57360.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29660Os.9135.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29670Os.53080.1.S1_at10/1110+15098924..15102234expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12663.1.S1_at--374--3751Chr10:15073729..15073753 (25 bp)
CTCACGGCCATGAGCGACGTCTACA
LOC_Os10g29620
Os.12663.1.S1_at--841--8331Chr10:15073487..15073511 (25 bp)
GGCGTACCACTGCCTGAACCGGAAC
LOC_Os10g29620
Os.12663.1.S1_at--188--4311Chr10:15073476..15073500 (25 bp)
GCCTGAACCGGAACCCCAAGGCGAG
LOC_Os10g29620
Os.12663.1.S1_at--723--6211Chr10:15073454..15073478 (25 bp)
GAGGCCGCTCATGCGGGACATCGTC
LOC_Os10g29620
Os.12663.1.S1_at--150--9151Chr10:15073443..15073467 (25 bp)
TGCGGGACATCGTCGCGTCGCTCGA
LOC_Os10g29620
Os.12663.1.S1_at--990--5791Chr10:15073358..15073382 (25 bp)
GACGCAGATGTTGTTGGGATTAATT
LOC_Os10g29620
Os.12663.1.S1_at--380--10071Chr10:15073273..15073297 (25 bp)
TAGTGATTAGCGGTTGAGTTGAGCT
LOC_Os10g29620
Os.12663.1.S1_at--29--6631Chr10:15073261..15073285 (25 bp)
GTTGAGTTGAGCTGAGTGTACGAAC
LOC_Os10g29620
Os.12663.1.S1_at--376--10771Chr10:15073255..15073279 (25 bp)
TTGAGCTGAGTGTACGAACGTTGTT
LOC_Os10g29620
Os.12663.1.S1_at--178--1851Chr10:15073242..15073266 (25 bp)
ACGAACGTTGTTAATGTGCAGGGAA
LOC_Os10g29620
Os.12663.1.S1_at--1153--2571Chr10:15073239..15073263 (25 bp)
AACGTTGTTAATGTGCAGGGAAGAT
LOC_Os10g29620
Target Sequence 
CTCACGGCCATGAGCGACGTCTACAGCTACGGCGTCGTCCTCCTCGAGCTCCTCACCGGCCGCAAGTCGCTCGACAAGTC
CCGCCCCCCGCGGGAGCAGACGCTCGCCGACTGGGCGCTCCCCCTCCTCACCCACAAGCGCAAGGTCATGTCCATCGTCG
ACCCCCGCCTCTCCGCCGCCGCCGCCGCCGCCGGCGCAGGCGGCGAGCTGCCGGCGAGGGCGGTGCACAAGGCGGCGATG
CTGGCGTACCACTGCCTGAACCGGAACCCCAAGGCGAGGCCGCTCATGCGGGACATCGTCGCGTCGCTCGAGCCGCTGCA
GGCCGACGACGAGGCGCGCGACGCCGCCGGCGCCTGAGAAGAAGGGAGAGGGACGCAGATGTTGTTGGGATTAATTAATT
AAAGCTGTATCATAATGAAAATCAAAAGATTTGGTAGTGCAGCAAGGGGGTAGGTGTAGTGATTAGCGGTTGAGTTGAGC
TGAGTGTACGAACGTTGTTAATGTGCAGGGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis