Browse Element(s) Details


Os.57360.1.S1_at

Description gb:AK111369.1
DB_XREF= gi:32996578
TID=Os.57360.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A03, full insert sequence.
FL= gb:AK111369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2966011/11TATA-box binding protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29620Os.12663.1.S1_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29620Os.12663.1.S1_x_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29630OsAffx.18450.1.S1_at6/1110+15077883..15079071hypothetical protein
LOC_Os10g29640OsAffx.5031.3.S1_x_at11/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.1.S1_x_at5/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.2.S1_x_at4/1110+15081116..15081928hypothetical protein
LOC_Os10g29650Os.51357.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_x_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.23790.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29660Os.57360.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29660Os.9135.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29670Os.53080.1.S1_at10/1110+15098924..15102234expressed protein
LOC_Os10g29680OsAffx.18451.1.S1_at11/1110+15107203..15108340hypothetical protein
LOC_Os10g29690OsAffx.18452.1.S1_at11/1110+15109238..15109714hypothetical protein
LOC_Os10g29700OsAffx.28148.1.S1_x_at11/1110+15114477..15115802hypothetical protein
LOC_Os10g29700OsAffx.16241.1.S1_at1/1110+15114477..15115802hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_x_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29720OsAffx.30596.1.S1_at1/1110+15121603..15125793hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006352biological_processtranscription initiation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003702molecular_functionRNA polymerase II transcription factor activity
GO:0017025molecular_functionTATA-binding protein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57360.1.S1_at--483--4651Chr10:15097704..15097728 (25 bp)
GCGTCGCAGGCTTGACGAGAACGAT
LOC_Os10g29660
Os.57360.1.S1_at--816--6731Chr10:15097672..15097696 (25 bp)
GTTCTTGGATGATCTGGATCTGGGA
LOC_Os10g29660
Os.57360.1.S1_at--1017--9471Chr10:15097645..15097669 (25 bp)
TCTGAATGTGGGATGTGAACTTGAC
LOC_Os10g29660
Os.57360.1.S1_at--158--7651Chr10:15097577..15097601 (25 bp)
GGGAGTAACAGCTAAACTTGACGGG
LOC_Os10g29660
Os.57360.1.S1_at--194--171Chr10:15097551..15097575 (25 bp)
ATTTTGTAGATCTGGACTTGCACGG
LOC_Os10g29660
Os.57360.1.S1_at--503--491Chr10:15097542..15097566 (25 bp)
ATCTGGACTTGCACGGGTTAGGGTT
LOC_Os10g29660
Os.57360.1.S1_at--711--2371Chr10:15097512..15097536 (25 bp)
AAACCTGCGGGTTCTTGATCTGATA
LOC_Os10g29660
Os.57360.1.S1_at--727--3831Chr10:15097508..15097532 (25 bp)
CTGCGGGTTCTTGATCTGATACGAT
LOC_Os10g29660
Os.57360.1.S1_at--54--6491Chr10:15097491..15097515 (25 bp)
GATACGATCTTGCATTGGTTTGGAG
LOC_Os10g29660
Os.57360.1.S1_at--1154--10731Chr10:15097472..15097496 (25 bp)
TTGGAGGAGTGCGAGTTTATCTGAT
LOC_Os10g29660
Os.57360.1.S1_at--1088--471Chr10:15097454..15097478 (25 bp)
ATCTGATGTGGAGGCCGATTCGTGC
LOC_Os10g29660
Target Sequence 
GCGTCGCAGGCTTGACGAGAACGATGGGGGTTGTTCTTGGATGATCTGGATCTGGGATATCTGAATGTGGGATGTGAACT
TGACGGGGCTTGTGGATCTTGATGGGTTTGGGGTGGTGGTGGTGGTGGGGAGTAACAGCTAAACTTGACGGGGATTTTGT
AGATCTGGACTTGCACGGGTTAGGGTTGGGGGAAACCTGCGGGTTCTTGATCTGATACGATCTTGCATTGGTTTGGAGGA
GTGCGAGTTTATCTGATGTGGAGGCCGATTCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis