Browse Element(s) Details


Os.46786.1.S1_at

Description gb:NM_196636.1
DB_XREF= gi:37534631
TID=Os.46786.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46786 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative pol polyprotein (OSJNBa0019M20.8), mRNA.
PROD=putative pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2965011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29610OsAffx.18449.1.S1_at11/1110+15062649..15063410hypothetical protein
LOC_Os10g29620Os.12663.1.S1_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29620Os.12663.1.S1_x_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29630OsAffx.18450.1.S1_at6/1110+15077883..15079071hypothetical protein
LOC_Os10g29640OsAffx.5031.3.S1_x_at11/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.1.S1_x_at5/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.2.S1_x_at4/1110+15081116..15081928hypothetical protein
LOC_Os10g29650Os.51357.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_x_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.23790.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29660Os.57360.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29660Os.9135.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29670Os.53080.1.S1_at10/1110+15098924..15102234expressed protein
LOC_Os10g29680OsAffx.18451.1.S1_at11/1110+15107203..15108340hypothetical protein
LOC_Os10g29690OsAffx.18452.1.S1_at11/1110+15109238..15109714hypothetical protein
LOC_Os10g29700OsAffx.28148.1.S1_x_at11/1110+15114477..15115802hypothetical protein
LOC_Os10g29700OsAffx.16241.1.S1_at1/1110+15114477..15115802hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_x_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_at11/1110+15118334..15118935hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46786.1.S1_at--947--10831Chr10:15091997..15092021 (25 bp)
TTGTGTGTCCTACAAGCCACAGAAG
LOC_Os10g29650
Os.46786.1.S1_at--418--8671Chr10:15091998..15092022 (25 bp)
TGTGTGTCCTACAAGCCACAGAAGC
LOC_Os10g29650
Os.46786.1.S1_at--854--7471Chr10:15091999..15092023 (25 bp)
GTGTGTCCTACAAGCCACAGAAGCT
LOC_Os10g29650
Os.46786.1.S1_at--991--8691Chr10:15092002..15092026 (25 bp)
TGTCCTACAAGCCACAGAAGCTTGC
LOC_Os10g29650
Os.46786.1.S1_at--373--7251Chr10:15092003..15092027 (25 bp)
GTCCTACAAGCCACAGAAGCTTGCA
LOC_Os10g29650
Os.46786.1.S1_at--539--9851Chr10:15092007..15092031 (25 bp)
TACAAGCCACAGAAGCTTGCATCAA
LOC_Os10g29650
Os.46786.1.S1_at--761--2651Chr10:15092010..15092034 (25 bp)
AAGCCACAGAAGCTTGCATCAACTT
LOC_Os10g29650
Os.46786.1.S1_at--348--1691Chr10:15092011..15092035 (25 bp)
AGCCACAGAAGCTTGCATCAACTTA
LOC_Os10g29650
Os.46786.1.S1_at--65--4411Chr10:15092012..15092036 (25 bp)
GCCACAGAAGCTTGCATCAACTTAC
LOC_Os10g29650
Os.46786.1.S1_at--999--3071Chr10:15092746..15093108 (25 bp)
AATAAGTTCTTATCATTGAGGGAAC
LOC_Os10g29650
Os.46786.1.S1_at--1139--6711Chr10:15092751..15093113 (25 bp)
GTTCTTATCATTGAGGGAACAAGAG
LOC_Os10g29650
Target Sequence 
TTGTGTGTCCTACAAGCCACAGAAGCTTGCATCAACTTACCAGGGTACAGTGAGGCAATTTCTTCATGAGAAAATAAGGG
ATTCATACACTCATCCTCAGTTTGTGTCCGATGTCATGAAGCCACTAAAAATGCAACAACTCATGGACCAGGAGGTTCAG
CATTTATCGTGTGGACAGCTCCAGAGAGTTGCATTATGCATTTGTCTTGGAAAGCCTGCAGATATTTATTTGATTGATGA
ACCAAGCGCATCTCTCGATTCAGAGCAGCGTCTTGTTGCCTCAAAGGTTATCAAAAGATTTATCATGCATGCAAAGAAAA
CTGCGTTTATTGTCGAGCATGATTTCATTATGGCAACCTACTTAGCCGACAGGGTTATCGTCTACGAGGGACAGCCTGCT
GTTGACTGTACTGCCAATGCACCACAGTCTTTGCTATCCGGGATGAATAAGTTCTTATCATTGAGGGAACAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis