Browse Element(s) Details


Os.23790.1.S1_at

Description gb:AK106572.1
DB_XREF= gi:32991781
TID=Os.23790.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-A11, full insert sequence.
FL= gb:AK106572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2965011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29610OsAffx.18449.1.S1_at11/1110+15062649..15063410hypothetical protein
LOC_Os10g29620Os.12663.1.S1_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29620Os.12663.1.S1_x_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29630OsAffx.18450.1.S1_at6/1110+15077883..15079071hypothetical protein
LOC_Os10g29640OsAffx.5031.3.S1_x_at11/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.1.S1_x_at5/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.2.S1_x_at4/1110+15081116..15081928hypothetical protein
LOC_Os10g29650Os.51357.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_x_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.23790.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29660Os.57360.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29660Os.9135.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29670Os.53080.1.S1_at10/1110+15098924..15102234expressed protein
LOC_Os10g29680OsAffx.18451.1.S1_at11/1110+15107203..15108340hypothetical protein
LOC_Os10g29690OsAffx.18452.1.S1_at11/1110+15109238..15109714hypothetical protein
LOC_Os10g29700OsAffx.28148.1.S1_x_at11/1110+15114477..15115802hypothetical protein
LOC_Os10g29700OsAffx.16241.1.S1_at1/1110+15114477..15115802hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_x_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_at11/1110+15118334..15118935hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23790.1.S1_at--612--7931Chr10:15093322..15093346 (25 bp)
GGATTACACGATGGCGCGGAGCATT
LOC_Os10g29650
Os.23790.1.S1_at--59--4691Chr10:15093337..15093461 (25 bp)
GCGGAGCATTATGTCGGTCTTCAGA
LOC_Os10g29650
Os.23790.1.S1_at--959--3371Chr10:15093493..15093517 (25 bp)
CAGCCTTTTAGAATGCCTCCTAGTA
LOC_Os10g29650
Os.23790.1.S1_at--864--8211Chr10:15093532..15093644 (25 bp)
GGAATTCTCTACTGGACTTCAGCCT
LOC_Os10g29650
Os.23790.1.S1_at--1128--3011Chr10:15093684..15093708 (25 bp)
AATGCCACGGCGGATAATGTTTGCG
LOC_Os10g29650
Os.23790.1.S1_at--365--3511Chr10:15093737..15093761 (25 bp)
CATGGGATTTCGTTTGTTGCTGGTT
LOC_Os10g29650
Os.23790.1.S1_at--932--4551Chr10:15093832..15093856 (25 bp)
GCGCCAGGTTTTTTGTCCCATAGAT
LOC_Os10g29650
Os.23790.1.S1_at--479--3451Chr10:15093880..15093904 (25 bp)
CAGTGGGTTTTCCTGGCGCCTTGAA
LOC_Os10g29650
Os.23790.1.S1_at--272--8411Chr10:15093894..15093918 (25 bp)
GGCGCCTTGAACCAGCAATTTATTT
LOC_Os10g29650
Os.23790.1.S1_at--791--3031Chr10:15093997..15094021 (25 bp)
AATCCAGGAGTGGTCAGGTTCACCT
LOC_Os10g29650
Os.23790.1.S1_at--498--7891Chr10:15094013..15094037 (25 bp)
GGTTCACCTGTGAAATCTACTTCAG
LOC_Os10g29650
Target Sequence 
GGATTACACGATGGCGCGGAGCATTATGTCGGTCTTCAGACTCAAGGAATTGCAGAATGATCAGAGGTCCCCAGCCTTTT
AGAATGCCTCCTAGTATGCATGATGGTAAAGGAATTCTCTACTGGACTTCAGCCTCAGCGATCGCAGGACGCGATGAGAT
GTCGTGAAGTCATCAATGCCACGGCGGATAATGTTTGCGGGAGTTTGGTCAAGAAGTGAAAGAACTTCATGGGATTTCGT
TTGTTGCTGGTTTTTAGACTTTAGAATGCTATTTGGGTTTATGGAATGTTTTGTGAACTTCTGAGATGTTTTATCATGTG
GCGCGCCAGGTTTTTTGTCCCATAGATTGTATTCGAGATTTGAATACAAACAGTGGGTTTTCCTGGCGCCTTGAACCAGC
AATTTATTTGCTATATGCTGGACTTGATTTAACTAAAAACGAGTATTGAGTTGTTTTATNTGGTTGGTGCGTTTGTTTTG
TTCTGGGAATCCAGGAGTGGTCAGGTTCACCTGTGAAATCTACTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis