Browse Element(s) Details


Os.5321.1.S1_at

Description gb:NM_196631.1
DB_XREF= gi:37534621
TID=Os.5321.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5321 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative DNA-binding protein (OSJNBa0019M20.3), mRNA.
PROD=putative DNA-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2956011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29514Os.12052.1.S1_at11/1110+15001215..15006732expressed protein
LOC_Os10g29514Os.46514.2.S1_x_at5/1110+15001215..15006732expressed protein
LOC_Os10g29514OsAffx.21636.1.S1_x_at2/1110+15001215..15006732expressed protein
LOC_Os10g29530Os.26783.1.S1_at11/1110+15008816..15011868expressed protein
LOC_Os10g29530Os.26783.2.S1_x_at10/1110+15008816..15011868expressed protein
LOC_Os10g29530Os.57299.1.S1_at9/1110+15008816..15011868expressed protein
LOC_Os10g29540Os.46677.1.S1_at11/1110+15012493..15021359EDR1, putative, expressed
LOC_Os10g29560Os.26516.1.S2_s_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29560Os.26516.1.S1_a_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29560Os.5321.1.S1_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29570OsAffx.20316.1.S1_at10/1110+15040381..15041796expressed protein
LOC_Os10g29580NANA10+15045228..15045807expressed protein
LOC_Os10g29590NANA10+15047024..15049211hypothetical protein
LOC_Os10g29610OsAffx.18449.1.S1_at11/1110+15062649..15063410hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5321.1.S1_at--633--4511Chr10:15038932..15038956 (25 bp)
GCCGAGCACGCCCACGCGAAGAATA
LOC_Os10g29560
Os.5321.1.S1_at--284--1831Chr10:15038939..15038963 (25 bp)
ACGCCCACGCGAAGAATACGGCGGC
LOC_Os10g29560
Os.5321.1.S1_at--3--7791Chr10:15038978..15039002 (25 bp)
GGTCCAAGGCCAAGGGCAGCGTCTT
LOC_Os10g29560
Os.5321.1.S1_at--1082--2871Chr10:15038989..15039013 (25 bp)
AAGGGCAGCGTCTTCTCCCGCATCA
LOC_Os10g29560
Os.5321.1.S1_at--647--3811Chr10:15039102..15039126 (25 bp)
CTCCAAGAAAGCACGTGCCGCTGTG
LOC_Os10g29560
Os.5321.1.S1_at--558--3231Chr10:15039105..15039129 (25 bp)
CAAGAAAGCACGTGCCGCTGTGGCG
LOC_Os10g29560
Os.5321.1.S1_at--249--1911Chr10:15039114..15039138 (25 bp)
ACGTGCCGCTGTGGCGGAGGACAAC
LOC_Os10g29560
Os.5321.1.S1_at--36--4151Chr10:15039204..15039228 (25 bp)
CGCGGCCGGAGACTACTACGGCGAG
LOC_Os10g29560
Os.5321.1.S1_at--5--6191Chr10:15039253..15039277 (25 bp)
GAGGAGCAGCATTTCAAGCGGCGCC
LOC_Os10g29560
Os.5321.1.S1_at--63--5951Chr10:15039256..15039280 (25 bp)
GAGCAGCATTTCAAGCGGCGCCCCT
LOC_Os10g29560
Os.5321.1.S1_at--372--8091Chr10:15039324..15039348 (25 bp)
GGAGCCGCGGCGGTCCAGGGAGCGC
LOC_Os10g29560
Target Sequence 
GCCGAGCACGCCCACGCGAAGAATACGGCGGCGGCGGCCGACGCGCGGTCCAAGGCCAAGGGCAGCGTCTTCTCCCGCAT
CAGCTTCCCCGGCGGCGACGGCAACCCTTCCGACGCCAAGCGCAGCCGCAGGTCCTCCTCCGACAAGCCCCCGGCGTCCT
CTTCTTCCTCCTCCAAGAAAGCACGTGCCGCTGTGGCGGAGGACAACGACGGCCGCCACCACCGCCGCCACCACCGTGAG
GCGGCCGCCGCGGCGGAAGAGAGGCGGAGGCCCGCGGCCGGAGACTACTACGGCGAGGAGGAGGAGGACGACGAGAGCGA
GGAGGAGCAGCATTTCAAGCGGCGCCCCTCGTCGTCGTCCAGGCGGGAGCGGGAGCATCAGGAGGCGCAGGAGGAGCCGC
GGCGGTCCAGGGAGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis