Browse Element(s) Details


OsAffx.30923.1.S1_at

Description tigr:9639.m01043
TID=OsAffx.30923.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1101010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10970OsAffx.22947.2.S1_x_at4/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.1.S1_x_at4/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.5.S1_x_at3/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.3.S1_x_at1/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10980Os.9996.2.S1_at11/1111+6054813..6061259pyruvate kinase family protein, expressed
LOC_Os11g10990Os.9996.1.S1_at11/1111+6060779..6062265DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os11g11000Os.11947.1.S1_a_at10/1111+6063705..6069244ABC1 family protein, expressed
LOC_Os11g11010OsAffx.30923.1.S1_at10/1111+6070865..6072074hypothetical protein
LOC_Os11g11020Os.39944.1.S1_at11/1111+6083465..6086950expressed protein
LOC_Os11g11030OsAffx.18793.1.S1_at11/1111+6087707..6088042hypothetical protein
LOC_Os11g11040OsAffx.30564.2.S1_s_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.1.S1_s_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.3.S1_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.2.S1_x_at4/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.1.S1_at4/1111+6089294..6090117hypothetical protein
LOC_Os11g11050Os.12719.2.S1_at11/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11050Os.12719.1.S1_at10/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11050Os.26865.1.S1_at1/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30923.1.S1_at--839--5951Chr11:6070896..6070920 (25 bp)
GAGCAATCTCATCATCAAGGGCGAA
LOC_Os11g11010
OsAffx.30923.1.S1_at--1031--2731Chr11:6070919..6070943 (25 bp)
AAGAAGATGCCGATTGTCATTGTCA
LOC_Os11g11010
OsAffx.30923.1.S1_at--561--6591Chr11:6070930..6070952 (23 bp)
GATTGTCATTGTCAGGAGAGCCCCA
LOC_Os11g11010
OsAffx.30923.1.S1_at--982--971NONE
AGGAGAGCCCCAAATGGTAAGCATA
NONE
OsAffx.30923.1.S1_at--1120--3113Chr11:6071838..6071862 (25 bp)
AATTTAAAGGCGCATATCACCACTT
LOC_Os11g11010
OsAffx.30923.1.S1_at--572--8393Chr11:6071846..6071870 (25 bp)
GGCGCATATCACCACTTATTATAAA
LOC_Os11g11010
OsAffx.30923.1.S1_at--902--1552Chr11:6071891..6071915 (25 bp)
AGCTTCTTCCTTAACGTTAGATGAA
LOC_Os11g11010
OsAffx.30923.1.S1_at--547--7411Chr11:6071926..6071950 (25 bp)
GTGATATTTCACAGGTTTCTCAATT
LOC_Os11g11010
OsAffx.30923.1.S1_at--195--3673Chr11:6071961..6071985 (25 bp)
GCTTTAGTACAAGATTTTTCTGAGG
LOC_Os11g11010
OsAffx.30923.1.S1_at--538--2792Chr11:6071995..6072019 (25 bp)
AAGATGCGACTTTTCAAATGGAACA
LOC_Os11g11010
OsAffx.30923.1.S1_at--654--2071Chr11:6072017..6072041 (25 bp)
ACATAATAAAGCTTCGGGTCCGGAT
LOC_Os11g11010
Target Sequence 
GAGCAATCTCATCATCAAGGGCGAAGAAGATGCCGATTGTCATTGTCAGGAGAGCCCCAAATGGTAAGCATAGGAAAATT
AATGGTGATCGGGAAATTAATGGTGATGCGAATTTAAAGGCGCATATCACCACTTATTATAAAGGTCTTTTGGCCCTTCC
TGAAGCTTCTTCCTTAACGTTAGATGAAAGCCAAATAAGTGATATTTCACAGGTTTCTCAATTAGAAAATAATGCTTTAG
TACAAGATTTTTCTGAGGAGGAAATTAAAGATGCGACTTTTCAAATGGAACATAATAAAGCTTCGGGTCCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis