Browse Element(s) Details


Os.11947.1.S1_a_at

Description gb:AK067129.1
DB_XREF= gi:32977147
TID=Os.11947.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11947 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095E13, full insert sequence.
FL= gb:AK067129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1100010/11ABC1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10950NANA11+6040065..6041559hypothetical protein
LOC_Os11g10960NANA11+6044464..6044850retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.2.S1_x_at4/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.1.S1_x_at4/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.5.S1_x_at3/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.3.S1_x_at1/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10980Os.9996.2.S1_at11/1111+6054813..6061259pyruvate kinase family protein, expressed
LOC_Os11g10990Os.9996.1.S1_at11/1111+6060779..6062265DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os11g11000Os.11947.1.S1_a_at10/1111+6063705..6069244ABC1 family protein, expressed
LOC_Os11g11010OsAffx.30923.1.S1_at10/1111+6070865..6072074hypothetical protein
LOC_Os11g11020Os.39944.1.S1_at11/1111+6083465..6086950expressed protein
LOC_Os11g11030OsAffx.18793.1.S1_at11/1111+6087707..6088042hypothetical protein
LOC_Os11g11040OsAffx.30564.2.S1_s_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.1.S1_s_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.3.S1_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.2.S1_x_at4/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.1.S1_at4/1111+6089294..6090117hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11947.1.S1_a_at--17--1411Chr11:6064449..6064473 (25 bp)
AGACGGAGCACGTTTGTTCCTTATC
LOC_Os11g11000
Os.11947.1.S1_a_at--180--8811Chr11:6064435..6064459 (25 bp)
TGTTCCTTATCGACGCTGGCATCAG
LOC_Os11g11000
Os.11947.1.S1_a_at--1041--8051Chr11:6064411..6064435 (25 bp)
GGAGACAACTTATTATGGCTTTCAC
LOC_Os11g11000
Os.11947.1.S1_a_at--478--2271Chr11:6064217..6064241 (25 bp)
AAATCGACATTCCATCAGTTGCTCT
LOC_Os11g11000
Os.11947.1.S1_a_at--1117--1231NONE
AGTTGCTCTCGAGGTTATCCAAGAT
NONE
Os.11947.1.S1_a_at--474--10131Chr11:6064105..6064210 (25 bp)
TATCCAAGATTTACCATCCGTCGCG
LOC_Os11g11000
Os.11947.1.S1_a_at--804--4151Chr11:6064082..6064106 (25 bp)
CGCGCGATTTCATGCTTTCTTGGAG
LOC_Os11g11000
Os.11947.1.S1_a_at--354--6571Chr11:6064056..6064080 (25 bp)
GATTCCATCCTGTCAGATCGGCAAT
LOC_Os11g11000
Os.11947.1.S1_a_at--2--9131Chr11:6063992..6064016 (25 bp)
TGCTGTCAAGACCTGCAGGAGCCAT
LOC_Os11g11000
Os.11947.1.S1_a_at--233--971Chr11:6063976..6064000 (25 bp)
AGGAGCCATTCTTCCTTCAGTTAAC
LOC_Os11g11000
Os.11947.1.S1_a_at--609--6231Chr11:6063820..6063844 (25 bp)
GATGGCTCTGTATATGCCGTTTGTA
LOC_Os11g11000
Target Sequence 
AGACGGAGCACGTTTGTTCCTTATCGACGCTGGCATCAGGAGACAACTTATTATGGCTTTCACNGAGGACTCCAAGTTGC
ATGTAGAAGAGCTTGTTGATGTGTACAGACTGGTCGAAGATCAAATCGACATTCCATCAGTTGCTCTCGAGGTTATCCAA
GATTTACCATCCGTCGCGCGCGATTTCATGCTTTCTTGGAGCGATTCCATCCTGTCAGATCGGCAATACTGATCTCAGGT
TAACAGTTTAGAGCAGCAAGCAGAAGTGCTGTCAAGACCTGCAGGAGCCATTCTTCCTTCAGTTAACCTACACTAAAATA
GATAGATATAGATGACTACATTTTTCCTCTTTGCTGTACACAATTTGGTTTGCTATTCTTTTCTATAGTATATCATTGTA
TAGGAAACTTGCCATCTGCATTTCATTTATATATTTTCGATGGCTCTGTATATGCCGTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11947.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis