Browse Element(s) Details


Os.27875.1.S1_at

Description gb:AK060033.1
DB_XREF= gi:32970051
TID=Os.27875.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative class III chitinase (OSJNBa0032I20.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H08, full insert sequence.
FL= gb:AK060033.1 gb:AK119555.1 gb:AK099101.1 gb:AK104222.1 gb:AK104292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2812011/11Chitinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28070OsAffx.8127.1.S1_at11/1110+14248422..14249066retrotransposon protein, putative, unclassified
LOC_Os10g28080Os.28124.1.S1_at11/1110+14260648..14261730Glycosyl hydrolases family 18 protein, expressed
LOC_Os10g28094OsAffx.20348.1.S1_at10/1110+14263515..14265786expressed protein
LOC_Os10g28110OsAffx.30564.2.S1_s_at4/1110+14271706..14271975hypothetical protein
LOC_Os10g28110OsAffx.30564.1.S1_s_at2/1110+14271706..14271975hypothetical protein
LOC_Os10g28120Os.27875.1.S1_at11/1110+14273126..14274259Chitinase 1 precursor, putative, expressed
LOC_Os10g28130OsAffx.30565.1.S1_at11/1110+14277415..14278292MATH domain containing protein
LOC_Os10g28130OsAffx.162.1.S1_x_at1/1110+14277415..14278292MATH domain containing protein
LOC_Os10g28140OsAffx.673.2.S1_at11/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28140OsAffx.673.1.S1_x_at2/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28140OsAffx.17708.1.S1_at2/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28150OsAffx.18425.1.S1_at11/1110+14283948..14286530Zinc knuckle family protein
LOC_Os10g28160OsAffx.18426.1.S1_x_at11/1110+14288165..14288497hypothetical protein
LOC_Os10g28170OsAffx.18426.1.S1_x_at11/1110+14292434..14292751hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27875.1.S1_at--955--7911Chr10:14273924..14273948 (25 bp)
GGATTGTTCATCTGGTCGGCGGACA
LOC_Os10g28120
Os.27875.1.S1_at--671--8551Chr10:14273936..14273960 (25 bp)
TGGTCGGCGGACAGCTCAAAGGTCA
LOC_Os10g28120
Os.27875.1.S1_at--346--2311Chr10:14273953..14273977 (25 bp)
AAAGGTCAGCAGCTATGGCTTTGAG
LOC_Os10g28120
Os.27875.1.S1_at--795--4071Chr10:14274033..14274057 (25 bp)
CGAGATATCGCTGTGGTTGGATTTG
LOC_Os10g28120
Os.27875.1.S1_at--606--9791Chr10:14274077..14274101 (25 bp)
TAAGCGGATATATTTGCCCAGTACA
LOC_Os10g28120
Os.27875.1.S1_at--476--3451Chr10:14274095..14274119 (25 bp)
CAGTACAGTTCTGGGCACGCATGGT
LOC_Os10g28120
Os.27875.1.S1_at--823--5091Chr10:14274109..14274133 (25 bp)
GCACGCATGGTGTTCTAATACTTAT
LOC_Os10g28120
Os.27875.1.S1_at--674--331Chr10:14274126..14274150 (25 bp)
ATACTTATTGCGTATATATGCAGTG
LOC_Os10g28120
Os.27875.1.S1_at--851--351Chr10:14274183..14274207 (25 bp)
ATAAGTTTCTTCAACATATATGCTA
LOC_Os10g28120
Os.27875.1.S1_at--625--231Chr10:14274198..14274222 (25 bp)
ATATATGCTATTTCTCCAATCTATG
LOC_Os10g28120
Os.27875.1.S1_at--822--5671Chr10:14274234..14274258 (25 bp)
GACATATATCTGTTTCGAGTTCACT
LOC_Os10g28120
Target Sequence 
GGATTGTTCATCTGGTCGGCGGACAGCTCAAAGGTCAGCAGCTATGGCTTTGAGTACGAGATCAAGGCTCAGGAGATCAT
CGCCAACCACTGATCGCTGATCGGACGGTCGAGATATCGCTGTGGTTGGATTTGGTATGAATGAATGACTGAATAAGCGG
ATATATTTGCCCAGTACAGTTCTGGGCACGCATGGTGTTCTAATACTTATTGCGTATATATGCAGTGAGATGGATATTAT
ATATATCTACAGAATATAAATAAGTTTCTTCAACATATATGCTATTTCTCCAATCTATGAATTAGTGACAGACATATATC
TGTTTCGAGTTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis