Browse Element(s) Details


Os.28124.1.S1_at

Description gb:AK059767.1
DB_XREF= gi:32969785
TID=Os.28124.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.28124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative class III chitinase (OSJNBa0032I20.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G07, full insert sequence.
FL= gb:AK104397.1 gb:AK104100.1 gb:AK059767.1 gb:AK104202.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2808011/11Glycosyl hydrolases family 18 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28060Os.46477.1.S1_at4/1110+14231422..14236340Fatty acid elongase, putative, expressed
LOC_Os10g28070OsAffx.8127.1.S1_at11/1110+14248422..14249066retrotransposon protein, putative, unclassified
LOC_Os10g28080Os.28124.1.S1_at11/1110+14260648..14261730Glycosyl hydrolases family 18 protein, expressed
LOC_Os10g28094OsAffx.20348.1.S1_at10/1110+14263515..14265786expressed protein
LOC_Os10g28110OsAffx.30564.2.S1_s_at4/1110+14271706..14271975hypothetical protein
LOC_Os10g28110OsAffx.30564.1.S1_s_at2/1110+14271706..14271975hypothetical protein
LOC_Os10g28120Os.27875.1.S1_at11/1110+14273126..14274259Chitinase 1 precursor, putative, expressed
LOC_Os10g28130OsAffx.30565.1.S1_at11/1110+14277415..14278292MATH domain containing protein
LOC_Os10g28130OsAffx.162.1.S1_x_at1/1110+14277415..14278292MATH domain containing protein
LOC_Os10g28140OsAffx.673.2.S1_at11/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28140OsAffx.673.1.S1_x_at2/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28140OsAffx.17708.1.S1_at2/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28150OsAffx.18425.1.S1_at11/1110+14283948..14286530Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28124.1.S1_at--134--9691Chr10:14261386..14261410 (25 bp)
TCAAGACCGGGAACGTCACCGGGCT
LOC_Os10g28080
Os.28124.1.S1_at--690--7671Chr10:14261472..14261496 (25 bp)
GGGTTGTTCATCTGGTCAGCGGATA
LOC_Os10g28080
Os.28124.1.S1_at--667--8591Chr10:14261484..14261508 (25 bp)
TGGTCAGCGGATAGCTCCATGGTCA
LOC_Os10g28080
Os.28124.1.S1_at--507--4791Chr10:14261497..14261521 (25 bp)
GCTCCATGGTCAGCAGCTACAAGTT
LOC_Os10g28080
Os.28124.1.S1_at--106--7111Chr10:14261505..14261529 (25 bp)
GTCAGCAGCTACAAGTTTGAGTACG
LOC_Os10g28080
Os.28124.1.S1_at--148--3211Chr10:14261516..14261540 (25 bp)
CAAGTTTGAGTACGAGACCAAGGCT
LOC_Os10g28080
Os.28124.1.S1_at--221--2651Chr10:14261556..14261580 (25 bp)
AACCACTGATCGTCCATCGAACGGT
LOC_Os10g28080
Os.28124.1.S1_at--155--8851Chr10:14261562..14261586 (25 bp)
TGATCGTCCATCGAACGGTCGTGAT
LOC_Os10g28080
Os.28124.1.S1_at--214--7811Chr10:14261626..14261650 (25 bp)
GGTCGTATTATATATCGAGCGTCAT
LOC_Os10g28080
Os.28124.1.S1_at--221--5891Chr10:14261642..14261666 (25 bp)
GAGCGTCATTATGCACGACTTACGT
LOC_Os10g28080
Os.28124.1.S1_at--1127--2951Chr10:14261678..14261702 (25 bp)
AATGGACTTATGTGCCGATTGGTAA
LOC_Os10g28080
Target Sequence 
TCAAGACCGGGAACGTCACCGGGCTGCTCTCGCCGGAGCAGGGGATCGCCGGCGCGAAGGAGTTGCAGCGGCAGGGGAAG
CTGCCGGGGTTGTTCATCTGGTCAGCGGATAGCTCCATGGTCAGCAGCTACAAGTTTGAGTACGAGACCAAGGCTCAGGA
GATCGTCGCCAACCACTGATCGTCCATCGAACGGTCGTGATNATACTTATGAAATAAGAGCAAATAAATTGCGAAATAAT
GGTCGTATTATATATCGAGCGTCATTATGCACGACTTACGTGCTAAATAAGAAATGGACTTATGTGCCGATTGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis