Browse Element(s) Details


OsAffx.20348.1.S1_at

Description gb:NM_196499.1
DB_XREF= gi:37534357
TID=OsAffx.20348.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0032I20.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2809410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28070OsAffx.8127.1.S1_at11/1110+14248422..14249066retrotransposon protein, putative, unclassified
LOC_Os10g28080Os.28124.1.S1_at11/1110+14260648..14261730Glycosyl hydrolases family 18 protein, expressed
LOC_Os10g28094OsAffx.20348.1.S1_at10/1110+14263515..14265786expressed protein
LOC_Os10g28110OsAffx.30564.2.S1_s_at4/1110+14271706..14271975hypothetical protein
LOC_Os10g28110OsAffx.30564.1.S1_s_at2/1110+14271706..14271975hypothetical protein
LOC_Os10g28120Os.27875.1.S1_at11/1110+14273126..14274259Chitinase 1 precursor, putative, expressed
LOC_Os10g28130OsAffx.30565.1.S1_at11/1110+14277415..14278292MATH domain containing protein
LOC_Os10g28130OsAffx.162.1.S1_x_at1/1110+14277415..14278292MATH domain containing protein
LOC_Os10g28140OsAffx.673.2.S1_at11/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28140OsAffx.673.1.S1_x_at2/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28140OsAffx.17708.1.S1_at2/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28150OsAffx.18425.1.S1_at11/1110+14283948..14286530Zinc knuckle family protein
LOC_Os10g28160OsAffx.18426.1.S1_x_at11/1110+14288165..14288497hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20348.1.S1_at--841--4611NONE
GCGAGGTCGTTTTTAACGCCTCACG
NONE
OsAffx.20348.1.S1_at--830--7991Chr10:14264025..14264049 (25 bp)
GGAGATGGTCGTCGTTGTCGGTGAG
LOC_Os10g28094
OsAffx.20348.1.S1_at--915--891Chr10:14263932..14263956 (25 bp)
AGGCTGGGCCCCATTGGCCAGCTCA
LOC_Os10g28094
OsAffx.20348.1.S1_at--324--8451Chr10:14263917..14263941 (25 bp)
GGCCAGCTCAGAGCGATGCATCGGA
LOC_Os10g28094
OsAffx.20348.1.S1_at--679--4391Chr10:14263889..14263913 (25 bp)
GCCACCGACGCAGAAGAGGGAAGCC
LOC_Os10g28094
OsAffx.20348.1.S1_at--449--9291Chr10:14263780..14263804 (25 bp)
TCCGTCATCGACAGCCTTTGCAAGA
LOC_Os10g28094
OsAffx.20348.1.S1_at--746--511Chr10:14263774..14263798 (25 bp)
ATCGACAGCCTTTGCAAGAACTCCA
LOC_Os10g28094
OsAffx.20348.1.S1_at--300--3672Chr10:14263765..14263789 (25 bp)
CTTTGCAAGAACTCCACAACTCCTG
LOC_Os10g28094
OsAffx.20348.1.S1_at--1141--2451Chr10:14263739..14263763 (25 bp)
AACACACGATCTAGATGGCCGCGAC
LOC_Os10g28094
OsAffx.20348.1.S1_at--910--2171Chr10:14263736..14263760 (25 bp)
ACACGATCTAGATGGCCGCGACGAG
LOC_Os10g28094
OsAffx.20348.1.S1_at--779--4471Chr10:14263696..14263720 (25 bp)
GCCGAGATCCAAGAGTGGCACGACG
LOC_Os10g28094
Target Sequence 
GCGAGGTCGTTTTTAACGCCTCACGAAAAGCGGAGCGTTACAAAAGAGGAGATGGTCGTCGTTGTCGGTGAGGTGGGGGA
GGCGGAGGAGGGGAAGGGGAAGGATGGTTGCGGCGGCATGGTGCGAGGCGACGACGAAGGAGGCTGGGCCCCATTGGCCA
GCTCAGAGCGATGCATCGGAGGGGCCACCGACGCAGAAGAGGGAAGCCCTGCCCCGGCCATGGCAGCGGCGGCGGCGCAA
CCGCCGCAAAGGAGGCTACCGGCGCACCGCCTCTACCGATCGCACCCGCACTTCCGTCATCGACAGCCTTTGCAAGAACT
CCACAACTCCTGCAACACACGATCTAGATGGCCGCGACGAGGTGCTCGGCGTGGTGGCCGAGATCCAAGAGTGGCACGAC
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis