Browse Element(s) Details


OsAffx.673.2.S1_at

Description gb:NM_196503.1
DB_XREF= gi:37534365
TID=OsAffx.673.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative non-LTR retroelement reverse transcriptase (OSJNBa0032I20.14), mRNA.
PROD=putative non-LTR retroelement reversetranscriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2814011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28080Os.28124.1.S1_at11/1110+14260648..14261730Glycosyl hydrolases family 18 protein, expressed
LOC_Os10g28094OsAffx.20348.1.S1_at10/1110+14263515..14265786expressed protein
LOC_Os10g28110OsAffx.30564.2.S1_s_at4/1110+14271706..14271975hypothetical protein
LOC_Os10g28110OsAffx.30564.1.S1_s_at2/1110+14271706..14271975hypothetical protein
LOC_Os10g28120Os.27875.1.S1_at11/1110+14273126..14274259Chitinase 1 precursor, putative, expressed
LOC_Os10g28130OsAffx.30565.1.S1_at11/1110+14277415..14278292MATH domain containing protein
LOC_Os10g28130OsAffx.162.1.S1_x_at1/1110+14277415..14278292MATH domain containing protein
LOC_Os10g28140OsAffx.673.2.S1_at11/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28140OsAffx.673.1.S1_x_at2/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28140OsAffx.17708.1.S1_at2/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28150OsAffx.18425.1.S1_at11/1110+14283948..14286530Zinc knuckle family protein
LOC_Os10g28160OsAffx.18426.1.S1_x_at11/1110+14288165..14288497hypothetical protein
LOC_Os10g28170OsAffx.18426.1.S1_x_at11/1110+14292434..14292751hypothetical protein
LOC_Os10g28180OsAffx.29816.1.S1_at11/1110+14300904..14303831hAT family dimerisation domain containing protein
LOC_Os10g28180OsAffx.29816.2.S1_at1/1110+14300904..14303831hAT family dimerisation domain containing protein
LOC_Os10g28190OsAffx.30566.1.S1_at11/1110+14304896..14305209hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.673.2.S1_at--704--8311Chr10:14281252..14281276 (25 bp)
TGGGTTTCTTGGATACTAGGATCAT
LOC_Os10g28140
OsAffx.673.2.S1_at--1097--7951Chr10:14281234..14281258 (25 bp)
GGATCATGAATTTTTGCCTTTTGAG
LOC_Os10g28140
OsAffx.673.2.S1_at--239--3531Chr10:14281200..14281224 (25 bp)
CATGAAGTTGGAAGGCGATTCTCAA
LOC_Os10g28140
OsAffx.673.2.S1_at--114--911Chr10:14281188..14281212 (25 bp)
AGGCGATTCTCAAGACATGAGCTGT
LOC_Os10g28140
OsAffx.673.2.S1_at--58--3532Chr12:4456806..4456829 (24 bp)
CATGAGCTGTGTTGTTCTTAGGAAC
NONE
OsAffx.673.2.S1_at--624--6791Chr10:14280917..14280941 (25 bp)
GTTATGGGTGCTCCTAATTGGGCTC
LOC_Os10g28140
OsAffx.673.2.S1_at--584--9231Chr10:14280906..14280930 (25 bp)
TCCTAATTGGGCTCTGTCCTTTAGA
LOC_Os10g28140
OsAffx.673.2.S1_at--1079--7633Chr09:9156149..9156168 (20 bp)
GGGAGAATACCTTGTGCTGATATCT
NONE
OsAffx.673.2.S1_at--387--311Chr10:14280635..14280659 (25 bp)
ATACCTTGTGCTGATATCTTAGTTC
LOC_Os10g28140
OsAffx.673.2.S1_at--1102--2331Chr10:14280269..14280293 (25 bp)
AAAGAGATCGCGAGGCCTTGATCGT
LOC_Os10g28140
OsAffx.673.2.S1_at--1130--871Chr10:14280257..14280281 (25 bp)
AGGCCTTGATCGTGCTGCTTGAGAA
LOC_Os10g28140
Target Sequence 
TGGGTTTCTTGGATACTAGGATCATGAATTTTTGCCTTTTGAGTAAATGGATCATGAAGTTGGAAGGCGATTCTCAAGAC
ATGAGCTGTGTTGTTCTTAGGAACAAGGAGGTTATGGGTGCTCCTAATTGGGCTCTGTCCTTTAGAAGAAATCTAGACCA
ATCTGACAAGGCTCAATTAGATCTTTTGAAAAGTTTGTTGCAGGATGTGAGGCTAGATGATTTGCTTGACAGCTTAATTT
GGCCTCATGAGAAGAATAAGAAATTCACTACTAAATCTATGTATAGGCTGTTAAAGTTTGGGGGTGTTGTGGACAGAGAG
ATGCAAGAGATTTGGGGGTGCAAAGTTCCTTTGAAAGTCAAGCATTTCCTGTTTTTGGCTGGGAGAGGGAGAATACCTTG
TGCTGATATCTTAGTTCAGAGAAATTGGAGGGGGGTAGTGTACAAGGCAATTTCTTTGATGCAGAGATGGAAGGTGCTGC
TGTCAAAAGAAAGAGATCGCGAGGCCTTGATCGTGCTGCTTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.673.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis