Browse Element(s) Details


OsAffx.30566.1.S1_at

Description tigr:9638.m02381
TID=OsAffx.30566.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2819011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28140OsAffx.673.2.S1_at11/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28140OsAffx.673.1.S1_x_at2/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28140OsAffx.17708.1.S1_at2/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28150OsAffx.18425.1.S1_at11/1110+14283948..14286530Zinc knuckle family protein
LOC_Os10g28160OsAffx.18426.1.S1_x_at11/1110+14288165..14288497hypothetical protein
LOC_Os10g28170OsAffx.18426.1.S1_x_at11/1110+14292434..14292751hypothetical protein
LOC_Os10g28180OsAffx.29816.1.S1_at11/1110+14300904..14303831hAT family dimerisation domain containing protein
LOC_Os10g28180OsAffx.29816.2.S1_at1/1110+14300904..14303831hAT family dimerisation domain containing protein
LOC_Os10g28190OsAffx.30566.1.S1_at11/1110+14304896..14305209hypothetical protein
LOC_Os10g28200Os.8361.1.S1_at11/1110+14310647..14313945NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g28210Os.50013.1.S1_at11/1110+14328215..14330029uncharacterized plant-specific domain TIGR01615 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30566.1.S1_at--84--3751Chr10:14305147..14305171 (25 bp)
CTCAATCCCTTGTCTTCTGGCTAGG
LOC_Os10g28190
OsAffx.30566.1.S1_at--886--9731Chr10:14305146..14305170 (25 bp)
TCAATCCCTTGTCTTCTGGCTAGGG
LOC_Os10g28190
OsAffx.30566.1.S1_at--434--9431Chr10:14305096..14305119 (24 bp)
TCGGTCTCGGTCTTCCGTTATTCGC
LOC_Os10g28190
OsAffx.30566.1.S1_at--546--7811Chr10:14305096..14305117 (22 bp)
GGTCTCGGTCTTCCGTTATTCGCCG
LOC_Os10g28190
OsAffx.30566.1.S1_at--399--9431Chr10:14304988..14305113 (25 bp)
TCGGTCTTCCGTTATTCGCCGCTGG
LOC_Os10g28190
OsAffx.30566.1.S1_at--518--3951Chr10:14304987..14305112 (25 bp)
CGGTCTTCCGTTATTCGCCGCTGGA
LOC_Os10g28190
OsAffx.30566.1.S1_at--154--7811Chr10:14304986..14305111 (25 bp)
GGTCTTCCGTTATTCGCCGCTGGAG
LOC_Os10g28190
OsAffx.30566.1.S1_at--1160--7131Chr10:14304985..14305110 (25 bp)
GTCTTCCGTTATTCGCCGCTGGAGA
LOC_Os10g28190
OsAffx.30566.1.S1_at--400--9571Chr10:14304984..14305109 (25 bp)
TCTTCCGTTATTCGCCGCTGGAGAG
LOC_Os10g28190
OsAffx.30566.1.S1_at--560--10411Chr10:14304977..14305102 (25 bp)
TTATTCGCCGCTGGAGAGTGGAGAC
LOC_Os10g28190
OsAffx.30566.1.S1_at--824--10631Chr10:14304974..14304995 (22 bp)
TTCGCCGCTGGAGAGTGGAGACGGA
LOC_Os10g28190
Target Sequence 
CTCAATCCCTTGTCTTCTGGCTAGGGGTGGGTGTTCGGTCAGACCGAAAAATTCGGTCTCGGTCTTCCGTTATTCGCCGC
TGGAGAGTGGAGACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis