Browse Element(s) Details


OsAffx.29816.2.S1_at

Description tigr:9637.m00962
TID=OsAffx.29816.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1241011/11hAT dimerisation domain-containing protein, putative
LOC_Os11g411101/11hAT family dimerisation domain containing protein
LOC_Os10g281801/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12370NANA9+7068308..7070423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g12380Os.54778.1.S1_at10/119+7076214..7077851No apical meristem protein, expressed
LOC_Os09g12390NANA9+7086048..7086810hypothetical protein
LOC_Os09g12400OsAffx.6250.1.S1_at11/119+7093058..7093822hypothetical protein
LOC_Os09g12410OsAffx.29816.2.S1_at11/119+7094651..7096308hAT dimerisation domain-containing protein, putative
LOC_Os09g12410OsAffx.29816.1.S1_at1/119+7094651..7096308hAT dimerisation domain-containing protein, putative
LOC_Os09g12420OsAffx.6251.1.S1_at11/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420Os.35344.18.S1_x_at10/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420Os.35344.3.S1_x_at8/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420OsAffx.22940.5.S1_at5/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420OsAffx.22940.5.S1_x_at3/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12430OsAffx.17663.1.S1_at11/119+7115096..7116458hypothetical protein
LOC_Os09g12440OsAffx.29817.1.S1_at11/119+7118890..7119611hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29816.2.S1_at--992--731Chr09:7095369..7095393 (25 bp)
ATGTTCATTATCTCATACCTAGGAT
LOC_Os09g12410
OsAffx.29816.2.S1_at--298--191Chr09:7095468..7095492 (25 bp)
ATTTCTCGGTCATACTTGATTGTAC
LOC_Os09g12410
OsAffx.29816.2.S1_at--194--7011Chr09:7095489..7095513 (25 bp)
GTACTCCTGATACAAGCGACCAAGA
LOC_Os09g12410
OsAffx.29816.2.S1_at--233--573Chr11:24129002..24129025 (24 bp)
ATCCTAGAGCTTTCTATTCTGCTTG
LOC_Os11g41110
OsAffx.29816.2.S1_at--664--10311Chr09:7095765..7095789 (25 bp)
TTTCTATTCTGCTTGCGGTTGTCAT
LOC_Os09g12410
OsAffx.29816.2.S1_at--920--3611Chr09:7095776..7095951 (25 bp)
CTTGCGGTTGTCATAGCAGGGCCCC
LOC_Os09g12410
OsAffx.29816.2.S1_at--319--3291Chr09:7095952..7095976 (25 bp)
CAAATTTGACAAGCCAGCCCTGAAT
LOC_Os09g12410
OsAffx.29816.2.S1_at--675--2651Chr09:7095962..7095986 (25 bp)
AAGCCAGCCCTGAATCGATACATTC
LOC_Os09g12410
OsAffx.29816.2.S1_at--885--5251Chr09:7095973..7095997 (25 bp)
GAATCGATACATTCAGGACTGCAAA
LOC_Os09g12410
OsAffx.29816.2.S1_at--888--2331Chr09:7095999..7096023 (25 bp)
AAAGAGCTGACTGCACTTGTGATCT
LOC_Os09g12410
OsAffx.29816.2.S1_at--959--1971Chr09:7096008..7096069 (25 bp)
ACTGCACTTGTGATCTAGACATAAT
LOC_Os09g12410
Target Sequence 
ATGTTCATTATCTCATACCTAGGATTCAAAATGAGTTGATACATTTGCTTGCTTGTGATGTTAAGGCTGAAATTATGAAG
AAAATAAAGAGAGCAAAATATTTCTCGGTCATACTTGATTGTACTCCTGATACAAGCGACCAAGAACAAATGTCTTTAAT
TATAAGATATGAGAAAGAACTAAAGGATCTTGATCTAGATATTGATGATGTGAGAGGACAAGGCTATGACAATGGGTCAA
ATATGAAAGGAAAACATCAAGGGGTACAAAAGAAACTTTTGGATATAAATCCTAGAGCTTTCTATTCTGCTTGCGGTTGT
CATAGCAGGGCCCCCAAATTTGACAAGCCAGCCCTGAATCGATACATTCAGGACTGCAAAGAAAGAGCTGACTGCACTTG
TGATCTAGACATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29816.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis