Browse Element(s) Details


OsAffx.6250.1.S1_at

Description tigr:9637.m00961
TID=OsAffx.6250.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1240011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12370NANA9+7068308..7070423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g12380Os.54778.1.S1_at10/119+7076214..7077851No apical meristem protein, expressed
LOC_Os09g12390NANA9+7086048..7086810hypothetical protein
LOC_Os09g12400OsAffx.6250.1.S1_at11/119+7093058..7093822hypothetical protein
LOC_Os09g12410OsAffx.29816.2.S1_at11/119+7094651..7096308hAT dimerisation domain-containing protein, putative
LOC_Os09g12410OsAffx.29816.1.S1_at1/119+7094651..7096308hAT dimerisation domain-containing protein, putative
LOC_Os09g12420OsAffx.6251.1.S1_at11/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420Os.35344.18.S1_x_at10/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420Os.35344.3.S1_x_at8/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420OsAffx.22940.5.S1_at5/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420OsAffx.22940.5.S1_x_at3/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12430OsAffx.17663.1.S1_at11/119+7115096..7116458hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6250.1.S1_at--532--611Chr09:7093768..7093792 (25 bp)
ATGCGCAATAGCTTGCTCGACGTTG
LOC_Os09g12400
OsAffx.6250.1.S1_at--411--7011Chr09:7093731..7093755 (25 bp)
GTACTTTTGTTTGGGATCACCTCTC
LOC_Os09g12400
OsAffx.6250.1.S1_at--857--2251Chr09:7093648..7093672 (25 bp)
AAATCTGCCGCAGTGATGGCTGCAA
LOC_Os09g12400
OsAffx.6250.1.S1_at--1091--3031Chr09:7093625..7093649 (25 bp)
AATCGCGGCGCTTATTTTTAGTACG
LOC_Os09g12400
OsAffx.6250.1.S1_at--16--7011Chr09:7093605..7093629 (25 bp)
GTACGGCACTTAACATCTTTTTCAA
LOC_Os09g12400
OsAffx.6250.1.S1_at--505--2411Chr09:7093514..7093538 (25 bp)
AAAAACACTCACTGGGTTCTCGCTC
LOC_Os09g12400
OsAffx.6250.1.S1_at--242--6731Chr09:7093295..7093523 (25 bp)
GTTCTCGCTCGGTTTATGTGTAGTA
LOC_Os09g12400
OsAffx.6250.1.S1_at--606--6151Chr09:7093238..7093262 (25 bp)
GAGGTTCGACGTTCATGTACGTGCA
LOC_Os09g12400
OsAffx.6250.1.S1_at--22--351Chr09:7093209..7093233 (25 bp)
ATAACAGGCTTGGTTTCGTCGCATT
LOC_Os09g12400
OsAffx.6250.1.S1_at--109--9351Chr09:7093191..7093215 (25 bp)
TCGCATTCTGCCGTAGCTTATTTAA
LOC_Os09g12400
OsAffx.6250.1.S1_at--518--8171Chr09:7093115..7093139 (25 bp)
GGAACTCACCATTTTGATAGCTGCT
LOC_Os09g12400
Target Sequence 
ATGCGCAATAGCTTGCTCGACGTTGGAGCTGAACTTGGTACTTTTGTTTGGGATCACCTCTCCCGCGAGATCGCCAAACC
TTACAAAGCCGAAGACGAAGCACTGTCCGAACAACTGGACAAATCTGCCGCAGTGATGGCTGCAATCGCGGCGCTTATTT
TTAGTACGGCACTTAACATCTTTTTCAACGTGGAATCAGTCTACCACAACGCTGCAAATATTGCAATTCAGGAGAACCAT
CAGGCAAATGTGGCAAAAACACTCACTGGGTTCTCGCTCGGTTTATGTGTAGTATACTGCTACATGAAAGCCAGTAACCT
ATTTTCGAGGTTCGACGTTCATGTACGTGCACGATATAACAGGCTTGGTTTCGTCGCATTCTGCCGTAGCTTATTTAAGC
ACAGCTCTCTACATTCTACCGTTCCGATGATCCAAGTCGGAGTCTACGTGGAACTCACCATTTTGATAGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis