Browse Element(s) Details


Os.8361.1.S1_at

Description gb:AK069385.1
DB_XREF= gi:32979409
TID=Os.8361.1
CNT=111
FEA=FLmRNA
TIER=FL+Stack
STK=32
UG=Os.8361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative epimerasedehydratase (OSJNBa0061K21.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012D14, full insert sequence.
FL= gb:AK069385.1 gb:AK104822.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2820011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28150OsAffx.18425.1.S1_at11/1110+14283948..14286530Zinc knuckle family protein
LOC_Os10g28160OsAffx.18426.1.S1_x_at11/1110+14288165..14288497hypothetical protein
LOC_Os10g28170OsAffx.18426.1.S1_x_at11/1110+14292434..14292751hypothetical protein
LOC_Os10g28180OsAffx.29816.1.S1_at11/1110+14300904..14303831hAT family dimerisation domain containing protein
LOC_Os10g28180OsAffx.29816.2.S1_at1/1110+14300904..14303831hAT family dimerisation domain containing protein
LOC_Os10g28190OsAffx.30566.1.S1_at11/1110+14304896..14305209hypothetical protein
LOC_Os10g28200Os.8361.1.S1_at11/1110+14310647..14313945NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g28210Os.50013.1.S1_at11/1110+14328215..14330029uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os10g28219OsAffx.20345.1.S1_x_at11/1110+14334033..14334329NA

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Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0019305biological_processdTDP-rhamnose biosynthesis
GO:0042732biological_processD-xylose metabolism
GO:0000139cellular_componentGolgi membrane
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0008460molecular_functiondTDP-glucose 4,6-dehydratase activity
GO:0047918molecular_functionGDP-mannose 3,5-epimerase activity
GO:0048040molecular_functionUDP-glucuronate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8361.1.S1_at--514--8651Chr10:14313301..14313325 (25 bp)
TGGGCACCCACAATGAAGCTCAAGG
LOC_Os10g28200
Os.8361.1.S1_at--894--8331Chr10:14313462..14313486 (25 bp)
GGCTGAGGTTCACCTACTTCTGGAT
LOC_Os10g28200
Os.8361.1.S1_at--386--8071Chr10:14313505..14313529 (25 bp)
GGAGAAGACCCAGGGCGTCGACATC
LOC_Os10g28200
Os.8361.1.S1_at--916--9351Chr10:14313522..14313546 (25 bp)
TCGACATCGCGGGTTACGGCTCATC
LOC_Os10g28200
Os.8361.1.S1_at--415--9931Chr10:14313536..14313560 (25 bp)
TACGGCTCATCCAAGGTGGTGTCCA
LOC_Os10g28200
Os.8361.1.S1_at--690--2351Chr10:14313618..14313642 (25 bp)
AAAGCTGCTACACCATGAAGATCAA
LOC_Os10g28200
Os.8361.1.S1_at--1093--9651Chr10:14313653..14313677 (25 bp)
TCAGCTTGATCGTGGCCATACCTTA
LOC_Os10g28200
Os.8361.1.S1_at--376--4331Chr10:14313668..14313692 (25 bp)
CCATACCTTACTTCGCTACAGATAG
LOC_Os10g28200
Os.8361.1.S1_at--680--4031Chr10:14313748..14313772 (25 bp)
CGTTCTTCCTGTCGTTATAACTCAT
LOC_Os10g28200
Os.8361.1.S1_at--854--3751Chr10:14313768..14313792 (25 bp)
CTCATATGCAGTACACCGGTTTCTT
LOC_Os10g28200
Os.8361.1.S1_at--1118--9271Chr10:14313836..14313860 (25 bp)
TCGCGTCGTGTTGGAAATTCTTCGT
LOC_Os10g28200
Target Sequence 
TGGGCACCCACAATGAAGCTCAAGGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAGAAGAC
CCAGGGCGTCGACATCGCGGGTTACGGCTCATCCAAGGTGGTGTCCACCCAGGCCCCGGTTCAGCTGGGCTCCCTCCGTG
CTGCCGATGGCAAGGAGTAATTTCAAAGCTGCTACACCATGAAGATCAATCAGCTCCTCTCAGCTTGATCGTGGCCATAC
CTTACTTCGCTACAGATAGCTCACAGAAATGAATTCTTCTTGGAAATCTTGCAACCTTTCAGAACAACAACAGCCGTTCT
TCCTGTCGTTATAACTCATATGCAGTACACCGGTTTCTTGTGTTTAAAAAGCTATACTCGAGATTTCTTCCTCTTTTTTT
TTTTCGCGTCGTGTTGGAAATTCTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis