Browse Element(s) Details


OsAffx.20345.1.S1_x_at

Description gb:NM_196513.1
DB_XREF= gi:37534385
TID=OsAffx.20345.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0061K21.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2821911/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28200Os.8361.1.S1_at11/1110+14310647..14313945NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g28210Os.50013.1.S1_at11/1110+14328215..14330029uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os10g28219OsAffx.20345.1.S1_x_at11/1110+14334033..14334329NA
LOC_Os10g28230Os.2344.1.S1_at10/1110+14348672..14349971Histone H2A variant, putative, expressed
LOC_Os10g28240Os.46832.1.S1_at11/1110+14352601..14355971Calcium-transporting ATPase 13, plasma membrane-type, putative, expressed
LOC_Os10g28250OsAffx.25007.2.S1_s_at9/1110+14357843..14359102retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20345.1.S1_x_at--287--4131Chr10:14334063..14334087 (25 bp)
CGCTTGGATCCAGTCTTGTCGGAGC
LOC_Os10g28219
OsAffx.20345.1.S1_x_at--652--4931Chr10:14334064..14334088 (25 bp)
GCTTGGATCCAGTCTTGTCGGAGCT
LOC_Os10g28219
OsAffx.20345.1.S1_x_at--169--3611Chr10:14334065..14334089 (25 bp)
CTTGGATCCAGTCTTGTCGGAGCTT
LOC_Os10g28219
OsAffx.20345.1.S1_x_at--984--10851Chr10:14334066..14334090 (25 bp)
TTGGATCCAGTCTTGTCGGAGCTTG
LOC_Os10g28219
OsAffx.20345.1.S1_x_at--275--8551Chr10:14334067..14334091 (25 bp)
TGGATCCAGTCTTGTCGGAGCTTGC
LOC_Os10g28219
OsAffx.20345.1.S1_x_at--333--6371Chr10:14334069..14334093 (25 bp)
GATCCAGTCTTGTCGGAGCTTGCGC
LOC_Os10g28219
OsAffx.20345.1.S1_x_at--1048--571Chr10:14334070..14334094 (25 bp)
ATCCAGTCTTGTCGGAGCTTGCGCG
LOC_Os10g28219
OsAffx.20345.1.S1_x_at--576--4351Chr10:14334072..14334096 (25 bp)
CCAGTCTTGTCGGAGCTTGCGCGAG
LOC_Os10g28219
OsAffx.20345.1.S1_x_at--1157--3611Chr10:14334077..14334101 (25 bp)
CTTGTCGGAGCTTGCGCGAGGAGGA
LOC_Os10g28219
OsAffx.20345.1.S1_x_at--999--3951Chr10:14334082..14334106 (25 bp)
CGGAGCTTGCGCGAGGAGGAGTTGA
LOC_Os10g28219
OsAffx.20345.1.S1_x_at--410--971Chr10:14334095..14334119 (25 bp)
AGGAGGAGTTGAAGATGCTGGTGGT
LOC_Os10g28219
Target Sequence 
CGCTTGGATCCAGTCTTGTCGGAGCTTGCGCGAGGAGGAGTTGAAGATGCTGGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20345.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis