Browse Element(s) Details


Os.50013.1.S1_at

Description gb:AK119634.1
DB_XREF= gi:37989257
TID=Os.50013.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F01, full insert sequence.
FL= gb:AK119634.1 gb:AK067822.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2821011/11uncharacterized plant-specific domain TIGR01615 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28180OsAffx.29816.1.S1_at11/1110+14300904..14303831hAT family dimerisation domain containing protein
LOC_Os10g28180OsAffx.29816.2.S1_at1/1110+14300904..14303831hAT family dimerisation domain containing protein
LOC_Os10g28190OsAffx.30566.1.S1_at11/1110+14304896..14305209hypothetical protein
LOC_Os10g28200Os.8361.1.S1_at11/1110+14310647..14313945NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g28210Os.50013.1.S1_at11/1110+14328215..14330029uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os10g28219OsAffx.20345.1.S1_x_at11/1110+14334033..14334329NA
LOC_Os10g28230Os.2344.1.S1_at10/1110+14348672..14349971Histone H2A variant, putative, expressed
LOC_Os10g28240Os.46832.1.S1_at11/1110+14352601..14355971Calcium-transporting ATPase 13, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50013.1.S1_at--1139--9551Chr10:14328590..14328614 (25 bp)
TCTTTTGGTTAGGATCAGATCAGGT
LOC_Os10g28210
Os.50013.1.S1_at--1062--6431Chr10:14328573..14328597 (25 bp)
GATCAGGTTAGCATCCACTTTTGGT
LOC_Os10g28210
Os.50013.1.S1_at--506--9991Chr10:14328565..14328589 (25 bp)
TAGCATCCACTTTTGGTCCCAAATT
LOC_Os10g28210
Os.50013.1.S1_at--1031--10851Chr10:14328553..14328577 (25 bp)
TTGGTCCCAAATTAAGCCTATAATA
LOC_Os10g28210
Os.50013.1.S1_at--733--7011Chr10:14328514..14328538 (25 bp)
GTACTAGCTAGAAGCTTGATCATGA
LOC_Os10g28210
Os.50013.1.S1_at--636--6551Chr10:14328478..14328502 (25 bp)
GATTATGGCCATTAGGCTCCTGTTT
LOC_Os10g28210
Os.50013.1.S1_at--629--3591Chr10:14328469..14328493 (25 bp)
CATTAGGCTCCTGTTTGTTTTCATT
LOC_Os10g28210
Os.50013.1.S1_at--919--8891Chr10:14328400..14328424 (25 bp)
TGAGTACATCATACACGGAGCTTTT
LOC_Os10g28210
Os.50013.1.S1_at--957--9831Chr10:14328389..14328413 (25 bp)
TACACGGAGCTTTTGATTTTGATTT
LOC_Os10g28210
Os.50013.1.S1_at--90--7931Chr10:14328364..14328388 (25 bp)
GGATTTTGAGTTTTGATCCCCACAA
LOC_Os10g28210
Os.50013.1.S1_at--1112--5791Chr10:14328222..14328246 (25 bp)
GACCGAATTGGAGGGTATGCTTCCC
LOC_Os10g28210
Target Sequence 
TCTTTTGGTTAGGATCAGATCAGGTTAGCATCCACTTTTGGTCCCAAATTAAGCCTATAATATTTCATAAGTAGTAGTAC
TAGCTAGAAGCTTGATCATGATAGTATGGTGAGATTATGGCCATTAGGCTCCTGTTTGTTTTCATTTTTGTAAGCAAAAT
GTTGCCCANGCAGACAAGTTGAGGCGAGAGATGAGTACATCATACACGGAGCTTTTGATTTTGATTTGGATTTTGAGTTT
TGATCCCCACAAATTAGAATTGTGCAATATTTTGTAGGATTATATGTTTAATATATACATGNTTTATGAACTGTTTGGAA
ATGAGCACTTATATTATGTANCAAGATTTGTATATAATGTTTGGAGGAAGACCGAATTGGAGGGTATGCTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis