Browse Element(s) Details


Os.46832.1.S1_at

Description gb:AK109037.1
DB_XREF= gi:32994246
TID=Os.46832.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46832 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative calcium-transporting ATPase (OSJNBa0061K21.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-C10, full insert sequence.
FL= gb:AK109037.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2824011/11Calcium-transporting ATPase 13, plasma membrane-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28210Os.50013.1.S1_at11/1110+14328215..14330029uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os10g28219OsAffx.20345.1.S1_x_at11/1110+14334033..14334329NA
LOC_Os10g28230Os.2344.1.S1_at10/1110+14348672..14349971Histone H2A variant, putative, expressed
LOC_Os10g28240Os.46832.1.S1_at11/1110+14352601..14355971Calcium-transporting ATPase 13, plasma membrane-type, putative, expressed
LOC_Os10g28250OsAffx.25007.2.S1_s_at9/1110+14357843..14359102retrotransposon protein, putative, LINE subclass
LOC_Os10g28260OsAffx.30567.1.S1_at10/1110+14372648..14373672hypothetical protein
LOC_Os10g28280OsAffx.6790.1.S1_at11/1110+14378077..14380116hypothetical protein
LOC_Os10g28280Os.50619.1.S1_at1/1110+14378077..14380116hypothetical protein
LOC_Os10g28280Os.50619.1.S1_x_at1/1110+14378077..14380116hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0005388molecular_functioncalcium-transporting ATPase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46832.1.S1_at--18--5471Chr10:14353039..14353063 (25 bp)
GAACGGGACGATGATCTTCAACGCG
LOC_Os10g28240
Os.46832.1.S1_at--363--9131Chr10:14353010..14353034 (25 bp)
TGCTGTGCCAGGTGTTCAACGAGTT
LOC_Os10g28240
Os.46832.1.S1_at--17--3931Chr10:14352949..14352973 (25 bp)
CGGCGTGCACCGGAACAGGATGTTC
LOC_Os10g28240
Os.46832.1.S1_at--896--2111Chr10:14352935..14352959 (25 bp)
ACAGGATGTTCCTGGGCATCGTCGC
LOC_Os10g28240
Os.46832.1.S1_at--1088--6051Chr10:14352879..14352903 (25 bp)
GAGTTGCTGACCAAGTTCGCCGGAA
LOC_Os10g28240
Os.46832.1.S1_at--1035--491Chr10:14352792..14352816 (25 bp)
ATCGGGTGGGCCGTCAAGTGCATCC
LOC_Os10g28240
Os.46832.1.S1_at--511--5891Chr10:14352759..14352783 (25 bp)
GAGCGGCCGTTCCACGAGATCATCA
LOC_Os10g28240
Os.46832.1.S1_at--692--9811Chr10:14352705..14352729 (25 bp)
TAACTATCAACGCTTACCACTGTTC
LOC_Os10g28240
Os.46832.1.S1_at--1008--4891Chr10:14352694..14352718 (25 bp)
GCTTACCACTGTTCATATTTTCGGA
LOC_Os10g28240
Os.46832.1.S1_at--225--10251Chr10:14352667..14352691 (25 bp)
TTTGTCGGTAGCTTAGGCCATTCTT
LOC_Os10g28240
Os.46832.1.S1_at--262--10411Chr10:14352633..14352657 (25 bp)
TTATACCATCTTGTTATTTGCCATA
LOC_Os10g28240
Target Sequence 
GAACGGGACGATGATCTTCAACGCGTTCGTGCTGTGCCAGGTGTTCAACGAGTTCAACGCGAGGGAGATCGAGAGGAGGA
ACGTGTTCGCCGGCGTGCACCGGAACAGGATGTTCCTGGGCATCGTCGCCGTCACGGTGGCGCTGCAGGTGGTGATGGTG
GAGTTGCTGACCAAGTTCGCCGGAACGGAGAGGCTGGGGTGGGGGCAGTGGGGCGCCTGCGTCGGCATTGCCGCCGTGTC
GTGGCCCATCGGGTGGGCCGTCAAGTGCATCCCGGTGCCGGAGCGGCCGTTCCACGAGATCATCACGGCGAGGAGGAGGA
GGAGAAGATCGACATAACTATCAACGCTTACCACTGTTCATATTTTCGGATTTTTGTCGGTAGCTTAGGCCATTCTTTTG
GAGATATTATACCATCTTGTTATTTGCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis