Browse Element(s) Details


OsAffx.30565.1.S1_at

Description tigr:9638.m02375
TID=OsAffx.30565.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=retroelement, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2813011/11MATH domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28080Os.28124.1.S1_at11/1110+14260648..14261730Glycosyl hydrolases family 18 protein, expressed
LOC_Os10g28094OsAffx.20348.1.S1_at10/1110+14263515..14265786expressed protein
LOC_Os10g28110OsAffx.30564.2.S1_s_at4/1110+14271706..14271975hypothetical protein
LOC_Os10g28110OsAffx.30564.1.S1_s_at2/1110+14271706..14271975hypothetical protein
LOC_Os10g28120Os.27875.1.S1_at11/1110+14273126..14274259Chitinase 1 precursor, putative, expressed
LOC_Os10g28130OsAffx.30565.1.S1_at11/1110+14277415..14278292MATH domain containing protein
LOC_Os10g28130OsAffx.162.1.S1_x_at1/1110+14277415..14278292MATH domain containing protein
LOC_Os10g28140OsAffx.673.2.S1_at11/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28140OsAffx.673.1.S1_x_at2/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28140OsAffx.17708.1.S1_at2/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28150OsAffx.18425.1.S1_at11/1110+14283948..14286530Zinc knuckle family protein
LOC_Os10g28160OsAffx.18426.1.S1_x_at11/1110+14288165..14288497hypothetical protein
LOC_Os10g28170OsAffx.18426.1.S1_x_at11/1110+14292434..14292751hypothetical protein
LOC_Os10g28180OsAffx.29816.1.S1_at11/1110+14300904..14303831hAT family dimerisation domain containing protein
LOC_Os10g28180OsAffx.29816.2.S1_at1/1110+14300904..14303831hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30565.1.S1_at--266--371Chr10:14277936..14277960 (25 bp)
ATCAAGTCCACCTCGTTCGCGGTGG
LOC_Os10g28130
OsAffx.30565.1.S1_at--1032--4411Chr10:14277908..14277932 (25 bp)
GCCATAGCTGGCACGTCGAGTACTA
LOC_Os10g28130
OsAffx.30565.1.S1_at--650--5871Chr10:14277795..14277819 (25 bp)
GAGCCGGTGAACGTGCAGCTTCGCT
LOC_Os10g28130
OsAffx.30565.1.S1_at--33--4531Chr10:14277712..14277736 (25 bp)
GCCGCCGTCTGAATTAGCCGACATG
LOC_Os10g28130
OsAffx.30565.1.S1_at--68--3151Chr10:14277701..14277725 (25 bp)
AATTAGCCGACATGCGTGGCGAGAA
LOC_Os10g28130
OsAffx.30565.1.S1_at--912--2891Chr10:14277678..14277702 (25 bp)
AAGGTGCGCGACTTCGACGGACAAG
LOC_Os10g28130
OsAffx.30565.1.S1_at--1139--791Chr10:14277584..14277608 (25 bp)
ATGGGCTGGCCATCAGGTGCGACAT
LOC_Os10g28130
OsAffx.30565.1.S1_at--51--1051Chr10:14277570..14277594 (25 bp)
AGGTGCGACATCGTTGTCATCACGC
LOC_Os10g28130
OsAffx.30565.1.S1_at--959--6631Chr10:14277558..14277582 (25 bp)
GTTGTCATCACGCAATCCTGCACGG
LOC_Os10g28130
OsAffx.30565.1.S1_at--506--7171Chr10:14277487..14277511 (25 bp)
GTCGTCCAGCGAGGAAATGGTTTCC
LOC_Os10g28130
OsAffx.30565.1.S1_at--408--4331Chr10:14277455..14277479 (25 bp)
CCATCGAGGACAAGGTGGTGAACCC
LOC_Os10g28130
Target Sequence 
ATCAAGTCCACCTCGTTCGCGGTGGGCGGCCATAGCTGGCACGTCGAGTACTACCCCAACGGCTACGACGCCGATCACAC
CGACTACGTCTCCGTCTTCCTCGTCCTCGAAGACGACATCGCCGCCGCCGGCGGCGCGGGCGAGCCGGTGAACGTGCAGC
TTCGCTTCCGCTTCGTCGACGCGTCGTCCAACCCCGGTCGGCCGTGGACGCCGCCGCCGCCGCCGCCGCCGTCTGAATTA
GCCGACATGCGTGGCGAGAAGGTGCGCGACTTCGACGGACAAGGGAATGGATGGGGCACCGTGGCGTTCAAGAAGAAGGA
GAAGCTGGAGAGGGAAGGGCTCATCGTGGAGGATGGGCTGGCCATCAGGTGCGACATCGTTGTCATCACGCAATCCTGCA
CGGCGACGACGACGACAGAGGCCTCGCTGGCCGCCGCCGCCGCGGCATCGTCGTCCAGCGAGGAAATGGTTTCCCCCACC
ACCATCGAGGACAAGGTGGTGAACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis