Browse Element(s) Details


OsAffx.162.1.S1_x_at

Description gb:NM_196507.1
DB_XREF= gi:37534373
TID=OsAffx.162.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0061K21.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g281301/11MATH domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28080Os.28124.1.S1_at11/1110+14260648..14261730Glycosyl hydrolases family 18 protein, expressed
LOC_Os10g28094OsAffx.20348.1.S1_at10/1110+14263515..14265786expressed protein
LOC_Os10g28110OsAffx.30564.2.S1_s_at4/1110+14271706..14271975hypothetical protein
LOC_Os10g28110OsAffx.30564.1.S1_s_at2/1110+14271706..14271975hypothetical protein
LOC_Os10g28120Os.27875.1.S1_at11/1110+14273126..14274259Chitinase 1 precursor, putative, expressed
LOC_Os10g28130OsAffx.30565.1.S1_at11/1110+14277415..14278292MATH domain containing protein
LOC_Os10g28130OsAffx.162.1.S1_x_at1/1110+14277415..14278292MATH domain containing protein
LOC_Os10g28140OsAffx.673.2.S1_at11/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28140OsAffx.673.1.S1_x_at2/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28140OsAffx.17708.1.S1_at2/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28150OsAffx.18425.1.S1_at11/1110+14283948..14286530Zinc knuckle family protein
LOC_Os10g28160OsAffx.18426.1.S1_x_at11/1110+14288165..14288497hypothetical protein
LOC_Os10g28170OsAffx.18426.1.S1_x_at11/1110+14292434..14292751hypothetical protein
LOC_Os10g28180OsAffx.29816.1.S1_at11/1110+14300904..14303831hAT family dimerisation domain containing protein
LOC_Os10g28180OsAffx.29816.2.S1_at1/1110+14300904..14303831hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.162.1.S1_x_at--227--5191NONE
GCAATGTGCAGGATTCGCTACGCTG
NONE
OsAffx.162.1.S1_x_at--171--2991NONE
AATGTGCAGGATTCGCTACGCTGGT
NONE
OsAffx.162.1.S1_x_at--766--91NONE
ATTCGCTACGCTGGTGAGGGCTCCG
NONE
OsAffx.162.1.S1_x_at--1101--4791Chr10:14298989..14299013 (25 bp)
GCTCGGCAGCCGTCGCTGTAAGGTC
NONE
OsAffx.162.1.S1_x_at--1139--4072Chr10:14298965..14298989 (25 bp)
CGAGCGGGCACCACGTGTTCGAGAT
NONE
OsAffx.162.1.S1_x_at--118--7611Chr10:14298960..14298984 (25 bp)
GGGCACCACGTGTTCGAGATACGCG
NONE
OsAffx.162.1.S1_x_at--758--1711Chr10:14298956..14298980 (25 bp)
ACCACGTGTTCGAGATACGCGACTA
NONE
OsAffx.162.1.S1_x_at--945--7411Chr10:14298951..14298975 (25 bp)
GTGTTCGAGATACGCGACTACTCCA
NONE
OsAffx.162.1.S1_x_at--397--9371Chr10:14298947..14298971 (25 bp)
TCGAGATACGCGACTACTCCATCCT
NONE
OsAffx.162.1.S1_x_at--1130--2471Chr10:14298906..14298930 (25 bp)
AACACCAAGTGCGTCAAGTCCGGCT
NONE
OsAffx.162.1.S1_x_at--1023--2851Chr10:14298900..14298924 (25 bp)
AAGTGCGTCAAGTCCGGCTCGTCAA
NONE
Target Sequence 
GCAATGTGCAGGATTCGCTACGCTGGTGAGGGCTCCGGCTCCGGCTCGGCAGCCGTCGCTGTAAGGTCGAGCGGGCACCA
CGTGTTCGAGATACGCGACTACTCCATCCTCAAGGCGATCACCCCCAACACCAAGTGCGTCAAGTCCGGCTCGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.162.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis