Browse Element(s) Details


Os.3121.1.S1_at

Description gb:AF350426.1
DB_XREF= gi:13445830
GEN=Rcb4
TID=Os.3121.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3121 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) class III chitinase RCB4 (Rcb4) mRNA, complete cds.
PROD=class III chitinase RCB4
FL= gb:AK061215.1 gb:AF350426.1 gb:AK071453.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2805011/11Chitinase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28020Os.28089.1.S2_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.56061.1.S1_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.28089.1.S1_at10/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_at5/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.24407.1.S1_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_x_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32245.1.A1_at2/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.26688.1.S2_s_at1/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.2.S1_s_at11/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.1.S1_at9/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030OsAffx.11282.1.S1_at1/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28040Os.21782.2.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_x_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28050Os.3121.1.S1_at11/1110+14229567..14230776Chitinase 2, putative, expressed
LOC_Os10g28060Os.46477.1.S1_at4/1110+14231422..14236340Fatty acid elongase, putative, expressed
LOC_Os10g28070OsAffx.8127.1.S1_at11/1110+14248422..14249066retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3121.1.S1_at--755--7711Chr10:14230151..14230175 (25 bp)
GGGTGATCAAGTTCGCCTCCATCGC
LOC_Os10g28050
Os.3121.1.S1_at--717--3571Chr10:14230204..14230228 (25 bp)
CATTACATGGCGCTGTGGGCCAAGT
LOC_Os10g28050
Os.3121.1.S1_at--123--4571Chr10:14230232..14230256 (25 bp)
GCGCCGTGATCGACTACATCAACTT
LOC_Os10g28050
Os.3121.1.S1_at--338--891Chr10:14230289..14230313 (25 bp)
AGGCGCAGTACGTCGACTTCTTCAA
LOC_Os10g28050
Os.3121.1.S1_at--242--3411Chr10:14230318..14230342 (25 bp)
CAGATCGTCAACTACCCCGGAGGGA
LOC_Os10g28050
Os.3121.1.S1_at--444--8031Chr10:14230336..14230360 (25 bp)
GGAGGGAACATCCTTGCGAGCTTCA
LOC_Os10g28050
Os.3121.1.S1_at--342--491Chr10:14230453..14230477 (25 bp)
ATCTGGGCTGCTGATCATTCCAGGA
LOC_Os10g28050
Os.3121.1.S1_at--809--71Chr10:14230469..14230493 (25 bp)
ATTCCAGGAGCCAAGGGTTCAAGTA
LOC_Os10g28050
Os.3121.1.S1_at--608--2831Chr10:14230489..14230513 (25 bp)
AAGTATGAGACAGAATCGCAAGCAC
LOC_Os10g28050
Os.3121.1.S1_at--749--6851Chr10:14230558..14230582 (25 bp)
GTTTGCTGCATTATTGTTTCACATT
LOC_Os10g28050
Os.3121.1.S1_at--627--1191Chr10:14230659..14230683 (25 bp)
AGTATATATCTAGCCGTGCATCATT
LOC_Os10g28050
Target Sequence 
GGGTGATCAAGTTCGCCTCCATCGCGCCCTTCGGNCAACGCCGAGGTCCAGCGCCATTACATGGCGCTGTGGGCCAAGTA
CGGCGCCGTGATCGACTACATCAACTTCCAGTTCTACGCCTACGGCGCCAGCACGACGGAGGCGCAGTACGTCGACTTCT
TCAACCAGCAGATCGTCAACTACCCCGGAGGGAACATCCTTGCGAGCTTCACGACGGCGGCGACGACGACCTCGGTGCCC
GTCGAGACGGCGCTGAGCGCTTGCCGGACTCTGCAGAAGGAGGGGAAGCTGTACGGCATCTTCATCTGGGCTGCTGATCA
TTCCAGGAGCCAAGGGTTCAAGTATGAGACAGAATCGCAAGCACTNCTGGCTAATGCCACCATCANTTACTAGCTAGTAG
CTAGTTTTGTTTGCTGCATTATTGTTTCACATTTTTAAACAAAGATCACAAGAGCTGTACTATGAAAATAAGCNACTCAA
ATTTGAAATACGAATTTGAATTAGCATCTAGTATATATCTAGCCGTGCATCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis