Browse Element(s) Details

OsAffx.32245.1.A1_at

Description

gb:BA000029.2
DB_XREF= gi:47118326
GEN=nad6
TID=OsAffx.32245.1
CNT=1
FEA=DNA_11
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NADH dehydrogenase subunit 6 (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=NADH dehydrogenase subunit 6
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g28020	2/11	prolyl oligopeptidase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g28000	Os.55787.1.S1_at	11/11	10	+	14176312..14179391	Glutathione reductase, chloroplast precursor, putative, expressed
LOC_Os10g28020	Os.28089.1.S2_at	11/11	10	+	14203446..14213741	prolyl oligopeptidase family protein, expressed
LOC_Os10g28020	Os.56061.1.S1_at	11/11	10	+	14203446..14213741	prolyl oligopeptidase family protein, expressed
LOC_Os10g28020	Os.28089.1.S1_at	10/11	10	+	14203446..14213741	prolyl oligopeptidase family protein, expressed
LOC_Os10g28020	OsAffx.32313.1.S1_at	5/11	10	+	14203446..14213741	prolyl oligopeptidase family protein, expressed
LOC_Os10g28020	OsAffx.24407.1.S1_at	3/11	10	+	14203446..14213741	prolyl oligopeptidase family protein, expressed
LOC_Os10g28020	OsAffx.32313.1.S1_x_at	3/11	10	+	14203446..14213741	prolyl oligopeptidase family protein, expressed
LOC_Os10g28020	OsAffx.32245.1.A1_at	2/11	10	+	14203446..14213741	prolyl oligopeptidase family protein, expressed
LOC_Os10g28020	Os.26688.1.S2_s_at	1/11	10	+	14203446..14213741	prolyl oligopeptidase family protein, expressed
LOC_Os10g28030	Os.46541.2.S1_s_at	11/11	10	+	14215104..14219614	prolyl oligopeptidase family protein, expressed
LOC_Os10g28030	Os.46541.1.S1_at	9/11	10	+	14215104..14219614	prolyl oligopeptidase family protein, expressed
LOC_Os10g28030	OsAffx.11282.1.S1_at	1/11	10	+	14215104..14219614	prolyl oligopeptidase family protein, expressed
LOC_Os10g28040	Os.21782.2.S1_at	11/11	10	+	14219847..14226137	acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040	Os.21782.1.S1_at	11/11	10	+	14219847..14226137	acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040	Os.21782.1.S1_x_at	11/11	10	+	14219847..14226137	acetyltransferase, GNAT family protein, expressed
LOC_Os10g28050	Os.3121.1.S1_at	11/11	10	+	14229567..14230776	Chitinase 2, putative, expressed
LOC_Os10g28060	Os.46477.1.S1_at	4/11	10	+	14231422..14236340	Fatty acid elongase, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.32245.1.A1_at--1095--15	1	NONE	ATTATAGTCCTCCTAGAGTCCAGGG	NONE
OsAffx.32245.1.A1_at--439--611	1	NONE	GAGTCCAGGGCATTTCGTCGGAATA	NONE
OsAffx.32245.1.A1_at--551--309	3	Chr10:14204368..14204392 (25 bp)	AATACATCCTGTCTTTGAACCTTTG	LOC_Os10g28020
OsAffx.32245.1.A1_at--763--543	3	Chr10:14204384..14204408 (25 bp)	GAACCTTTGTAGTCCTATGCATAGT	LOC_Os10g28020
OsAffx.32245.1.A1_at--1123--1005	2	Chr03:14277685..14277709 (25 bp)	TAGTCAGTACTATAGCTCCAATCAT	NONE
OsAffx.32245.1.A1_at--543--1069	1	NONE	TTGCCCAATGTGTCCAAATTAGTCC	NONE
OsAffx.32245.1.A1_at--781--919	1	Chr12:20505821..20505937 (25 bp)	TCCAATTTCGTACCTTTCCGGCATA	NONE
OsAffx.32245.1.A1_at--530--309	1	Chr12:20505677..20505701 (25 bp)	AATAGCGCAATACTTCTTCGTGAAT	NONE
OsAffx.32245.1.A1_at--250--1055	1	NONE	TTCTTCGTGAATCTCCGCTATTTGA	NONE
OsAffx.32245.1.A1_at--93--705	3	Chr12:20505540..20505563 (24 bp)	GTAAACCAGCTGTGTCGCAAAAGAT	NONE
OsAffx.32245.1.A1_at--1118--819	3	Chr12:13380415..13380439 (25 bp)	GGAATGTACCGGATTTTTAGCACGT	NONE

Target Sequence

ATTATAGTCCTCCTAGAGTCCAGGGCATTTCGTCGGAATACATCCTGTCTTTGAACCTTTGTAGTCCTATGCATAGTCAG
TACTATAGCTCCAATCATAGCTACTAATGAGATCAGAGTAGAAACCAAAAACCAGACGGAATAGTAGGTATAAAGTAAAT
TGCCCAATGTGTCCAAATTAGTCCAATTTCGTACCTTTCCGGCATAAACCGTATATCTCAGAGAGGTCGTATTTCTGTGG
GTTGGTAGTAATGGAATGGTTTCATTATCTAAAATGAAGAACATTTCCCACCAAAAGATCAGTCCAATAATACCACTCAC
TGGTAAATAGCGCAATACTTCTTCGTGAATCTCCGCTATTTGAATATTGAACATCATAACCACGAATAGGAATGAAACGG
CAATAGCTCCTATATGAATTACTGGGGAGATCATAGCGGAGAAGTCGAGACCTAACAAAATAAGTAAACCAGCTGTGTCG
CAAAAGATTAGGATGGGAAACAAAACGGAATGTACCGGATTTTTAGCACGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis