Browse Element(s) Details


Os.21782.2.S1_at

Description gb:NM_196493.1
DB_XREF= gi:37534345
TID=Os.21782.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.21782 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) contains similarity to histone acetyltransferase GCN5 (OSJNBa0032I20.6), mRNA.
PROD=contains similarity to histone acetyltransferaseGCN5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2804011/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28020Os.28089.1.S2_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.56061.1.S1_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.28089.1.S1_at10/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_at5/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.24407.1.S1_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_x_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32245.1.A1_at2/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.26688.1.S2_s_at1/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.2.S1_s_at11/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.1.S1_at9/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030OsAffx.11282.1.S1_at1/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28040Os.21782.2.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_x_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28050Os.3121.1.S1_at11/1110+14229567..14230776Chitinase 2, putative, expressed
LOC_Os10g28060Os.46477.1.S1_at4/1110+14231422..14236340Fatty acid elongase, putative, expressed
LOC_Os10g28070OsAffx.8127.1.S1_at11/1110+14248422..14249066retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0010030biological_processpositive regulation of seed germination
GO:0045941biological_processpositive regulation of transcription
GO:0000123cellular_componenthistone acetyltransferase complex
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0004402molecular_functionhistone acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21782.2.S1_at--938--3591Chr10:14221822..14221846 (25 bp)
CATTGTTGAAGGCAAGTCTTTTATC
LOC_Os10g28040
Os.21782.2.S1_at--471--7151Chr10:14221807..14221831 (25 bp)
GTCTTTTATCTTCGCAAATCTTTTT
LOC_Os10g28040
Os.21782.2.S1_at--1010--3291Chr10:14221793..14221817 (25 bp)
CAAATCTTTTTATATGACATGCAAC
LOC_Os10g28040
Os.21782.2.S1_at--647--5151Chr10:14221773..14221797 (25 bp)
GCAACCATTTGGTTTGACCTCACTG
LOC_Os10g28040
Os.21782.2.S1_at--1148--5831Chr10:14221758..14221782 (25 bp)
GACCTCACTGGATAAACCTGTACTT
LOC_Os10g28040
Os.21782.2.S1_at--85--8751Chr10:14221740..14221764 (25 bp)
TGTACTTTGCTTGCTCCCTTTTGAA
LOC_Os10g28040
Os.21782.2.S1_at--786--4911Chr10:14221732..14221756 (25 bp)
GCTTGCTCCCTTTTGAATTTTTTGC
LOC_Os10g28040
Os.21782.2.S1_at--452--10371Chr10:14221715..14221739 (25 bp)
TTTTTTGCACCCTTTCTGTTTCAAG
LOC_Os10g28040
Os.21782.2.S1_at--393--5091Chr10:14221709..14221733 (25 bp)
GCACCCTTTCTGTTTCAAGCATATT
LOC_Os10g28040
Os.21782.2.S1_at--540--4931Chr10:14221691..14221715 (25 bp)
GCATATTTTCTAAAGCCAGACCAGC
LOC_Os10g28040
Os.21782.2.S1_at--418--3911Chr10:14221667..14221691 (25 bp)
CTGGATGGTCTGTTCAATGGTTCAA
LOC_Os10g28040
Target Sequence 
CATTGTTGAAGGCAAGTCTTTTATCTTCGCAAATCTTTTTATATGACATGCAACCATTTGGTTTGACCTCACTGGATAAA
CCTGTACTTTGCTTGCTCCCTTTTGAATTTTTTGCACCCTTTCTGTTTCAAGCATATTTTCTAAAGCCAGACCAGCTGGA
TGGTCTGTTCAATGGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21782.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis