Browse Element(s) Details


Os.56061.1.S1_at

Description gb:AK109190.1
DB_XREF= gi:32994399
TID=Os.56061.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-B03, full insert sequence.
FL= gb:AK109190.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2802011/11prolyl oligopeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28000Os.55787.1.S1_at11/1110+14176312..14179391Glutathione reductase, chloroplast precursor, putative, expressed
LOC_Os10g28020Os.28089.1.S2_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.56061.1.S1_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.28089.1.S1_at10/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_at5/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.24407.1.S1_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_x_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32245.1.A1_at2/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.26688.1.S2_s_at1/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.2.S1_s_at11/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.1.S1_at9/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030OsAffx.11282.1.S1_at1/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28040Os.21782.2.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_x_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28050Os.3121.1.S1_at11/1110+14229567..14230776Chitinase 2, putative, expressed
LOC_Os10g28060Os.46477.1.S1_at4/1110+14231422..14236340Fatty acid elongase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56061.1.S1_at--183--7571Chr10:14203641..14203665 (25 bp)
GGGCTCTTCGAGTTCACGAGGTGTC
LOC_Os10g28020
Os.56061.1.S1_at--988--6931Chr10:14203703..14203727 (25 bp)
GTAGAGATCAGGTGTGTCCTCCTTT
LOC_Os10g28020
Os.56061.1.S1_at--1045--7451Chr10:14203716..14203740 (25 bp)
GTGTCCTCCTTTGGATCGCTTTTAT
LOC_Os10g28020
Os.56061.1.S1_at--523--4891Chr10:14203733..14203757 (25 bp)
GCTTTTATCTGTTCGAGCGATTGCT
LOC_Os10g28020
Os.56061.1.S1_at--652--1631Chr10:14203748..14203772 (25 bp)
AGCGATTGCTTGGTCCGGTAGCGAT
LOC_Os10g28020
Os.56061.1.S1_at--1148--91Chr10:14203771..14203795 (25 bp)
ATTCGGGTGTGAGACTGAGCCATCT
LOC_Os10g28020
Os.56061.1.S1_at--482--5731Chr10:14203783..14203807 (25 bp)
GACTGAGCCATCTGCGCCTCTGTTA
LOC_Os10g28020
Os.56061.1.S1_at--1092--4451Chr10:14203798..14203822 (25 bp)
GCCTCTGTTACTGTTTCTGTTTTTT
LOC_Os10g28020
Os.56061.1.S1_at--72--9471Chr10:14203842..14203866 (25 bp)
TCTGAAAATTAGGATGGCACCCAGC
LOC_Os10g28020
Os.56061.1.S1_at--772--5091Chr10:14203858..14203882 (25 bp)
GCACCCAGCGGTATGAGATTGTTGT
LOC_Os10g28020
Os.56061.1.S1_at--217--6591Chr10:14203884..14203908 (25 bp)
GATTGTTTGATTTCCTGGTGGTTGG
LOC_Os10g28020
Target Sequence 
GGGCTCTTCGAGTTCACGAGGTGTCGTTTTTTTTTTTTTCGGGGGGATTTCTCCAGGAGGATTAGTAGAGATCAGGTGTG
TCCTCCTTTGGATCGCTTTTATCTGTTCGAGCGATTGCTTGGTCCGGTAGCGATTCGGGTGTGAGACTGAGCCATCTGCG
CCTCTGTTACTGTTTCTGTTTTTTCCTTTAATGGGGATGGTTTTCTGAAAATTAGGATGGCACCCAGCGGTATGAGATTG
TTGTGGATTGTTTGATTTCCTGGTGGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis