Browse Element(s) Details


Os.26688.1.S2_s_at

Description gb:AK071967.1
DB_XREF= gi:32981990
TID=Os.26688.1
CNT=77
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.26688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ribosomal protein L14 (P0557A01.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013084G06, full insert sequence.
FL= gb:AK071967.1 gb:AK105308.1 gb:AK059459.1 gb:AK058501.1 gb:AK104024.1 gb:AK063122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1061011/11retrotransposon protein, putative, unclassified
LOC_Os01g5795010/1150S ribosomal protein L14, putative
LOC_Os10g280201/11prolyl oligopeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10590Os.48031.1.S1_x_at10/1112+5643883..5644631ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os12g10590OsAffx.32314.1.S1_at7/1112+5643883..5644631ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os12g10600Os.26592.1.S1_s_at11/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.2.A1_s_at7/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.3.S1_x_at7/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.2.A1_x_at4/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10604OsAffx.32330.1.S1_x_at11/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32329.1.S1_x_at9/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604Os.51504.1.A1_at8/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32331.1.A1_at8/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32332.1.A1_at7/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32334.1.A1_at7/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.23830.2.S1_at5/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32333.1.A1_at5/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10610Os.26688.1.S2_s_at11/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610OsAffx.32337.1.S1_x_at3/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610Os.38764.1.S1_x_at1/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610OsAffx.20877.1.S1_at1/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10620NANA12+5661215..5661832hypothetical protein
LOC_Os12g10630OsAffx.31685.1.S1_at11/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g10630OsAffx.24770.1.S1_x_at1/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26688.1.S2_s_at--70--7112Chr09:11949001..11949025 (25 bp)
ATGATTCAACCTCAGACCCTTTTAA
NONE
Os.26688.1.S2_s_at--134--34313Chr09:11949013..11949037 (25 bp)
CAGACCCTTTTAAATGTAGCAGATA
NONE
Os.26688.1.S2_s_at--148--1112Chr09:11949064..11949088 (25 bp)
ATTCGAGTCATAGGAGCTGCTAGTA
NONE
Os.26688.1.S2_s_at--444--33913Chr09:11949091..11949115 (25 bp)
CAGCGATATGCTCGTATTGGTGATG
NONE
Os.26688.1.S2_s_at--105--87511Chr08:10791066..10791090 (25 bp)
TGTAATCAAAGACGCAGTGCCCCAA
NONE
Os.26688.1.S2_s_at--413--11314Chr09:11949141..11949165 (25 bp)
AGTGCCCCAAATGCCTCTAGAAAGA
NONE
Os.26688.1.S2_s_at--15--97515Chr10:14206322..14206341 (20 bp)
TAATTCGAGCTGTAATTGTACGTAC
LOC_Os10g28020
Os.26688.1.S2_s_at--189--6512Chr09:11949248..11949272 (25 bp)
ATGCAGCGGTTATCATTGATCAAAA
NONE
Os.26688.1.S2_s_at--125--29310Chr09:11949284..11949308 (25 bp)
AAGGAACTCGCGTTTTTGGCGCGAT
NONE
Os.26688.1.S2_s_at--711--103510Chr09:11949296..11949320 (25 bp)
TTTTTGGCGCGATCGCCGAGGAATT
NONE
Os.26688.1.S2_s_at--741--22511Chr09:11949341..11949365 (25 bp)
AAATAGTTTCATTAGCTCCTGAAGT
NONE
Target Sequence 
ATGATTCAACCTCAGACCCTTTTAAATGTAGCAGATAACAGTGGAGCTCGAAAATTGATGTGTATTCGAGTCATAGGAGC
TGCTAGTAATCAGCGATATGCTCGTATTGGTGATGTTATTGTTGCTGTAATCAAAGACGCAGTGCCCCAAATGCCTCTAG
AAAGATCCGAAGTAATTCGAGCTGTAATTGTACGTACATGTAAAGAGTTCAAATGCGAAGACGGTATAATAATACGCTAT
GACGACAATGCAGCGGTTATCATTGATCAAAANAGGAAATCCAAAAGGAACTCGCGTTTTTGGCGCGATCGCCGAGGAAT
TGAGAGAATTGAATTTTACTAAAATAGTTTCATTAGCTCCTGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26688.1.S2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis