Browse Element(s) Details


Os.11341.1.S1_a_at

Description gb:AK072954.1
DB_XREF= gi:32982977
TID=Os.11341.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serine carboxypeptidase (OSJNBa0046L02.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149K09, full insert sequence.
FL= gb:AK104807.1 gb:AK072954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0113411/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01090OsAffx.20823.2.S1_x_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.20823.2.S1_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.22945.1.S1_at1/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01100Os.20092.1.S1_at11/1110+79108..81917Protein kinase domain containing protein, expressed
LOC_Os10g01110Os.46869.1.A1_at11/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110Os.46869.2.S1_x_at10/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110OsAffx.19331.1.S1_at1/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01120OsAffx.450.1.S1_at11/1110+89181..90171retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01134Os.11341.3.S1_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.3.S1_x_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.1.S1_a_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01150OsAffx.449.1.A1_at11/1110+101923..102590hypothetical protein
LOC_Os10g01150OsAffx.449.1.A1_x_at11/1110+101923..102590hypothetical protein
LOC_Os10g01164OsAffx.448.1.S1_x_at6/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.448.1.S1_at3/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.8127.1.S1_at1/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01180OsAffx.20631.1.S1_x_at2/1110+112811..113521retrotransposon protein, putative, unclassified
LOC_Os10g01180Os.33601.3.S1_x_at1/1110+112811..113521retrotransposon protein, putative, unclassified
LOC_Os10g01200OsAffx.447.1.S1_at11/1110+116265..117206retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01210NANA10+118261..119952retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11341.1.S1_a_at--917--3951Chr10:94798..94822 (25 bp)
CGGAGCTCACGCAGCGCGGCTACAG
LOC_Os10g01134
Os.11341.1.S1_a_at--738--4131Chr10:94771..94795 (25 bp)
CGCTGGTGTACAACGGCGACCACGA
LOC_Os10g01134
Os.11341.1.S1_a_at--663--5851Chr10:94754..94778 (25 bp)
GACCACGACCTGGACATGACGTTCG
LOC_Os10g01134
Os.11341.1.S1_a_at--458--8531Chr10:94744..94768 (25 bp)
TGGACATGACGTTCGTTGGCACGCA
LOC_Os10g01134
Os.11341.1.S1_a_at--138--10631Chr10:94733..94757 (25 bp)
TTCGTTGGCACGCAGCAGTGGATCC
LOC_Os10g01134
Os.11341.1.S1_a_at--300--3471Chr10:94718..94742 (25 bp)
CAGTGGATCCGGACGCTGGGCTACA
LOC_Os10g01134
Os.11341.1.S1_a_at--301--6371Chr10:94713..94737 (25 bp)
GATCCGGACGCTGGGCTACAACGTG
LOC_Os10g01134
Os.11341.1.S1_a_at--719--9851Chr10:94697..94721 (25 bp)
TACAACGTGGTGACCGCCTGGAGGC
LOC_Os10g01134
Os.11341.1.S1_a_at--280--4391Chr10:94567..94591 (25 bp)
CCAAGGAGTGCCTCGACATGCTCGA
LOC_Os10g01134
Os.11341.1.S1_a_at--418--5671Chr10:94553..94577 (25 bp)
GACATGCTCGACAGATGGACCTCTC
LOC_Os10g01134
Os.11341.1.S1_a_at--976--611Chr10:94550..94574 (25 bp)
ATGCTCGACAGATGGACCTCTCCGG
LOC_Os10g01134
Target Sequence 
CGGAGCTCACGCAGCGCGGCTACAGGGCGCTGGTGTACAACGGCGACCACGACCTGGACATGACGTTCGTTGGCACGCAG
CAGTGGATCCGGACGCTGGGCTACAACGTGGTGACCGCCTGGAGGCCGTGGTACTCCAACCGCCAGGTTNGCCGGCTTCA
CCACCGTCTACGACCACAACCTCACCTTCGCCACCGTCAAGGGCGGTGGCCACACCGCCCCGGAGTACCGCCCCAAGGAG
TGCCTCGACATGCTCGACAGATGGACCTCTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11341.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis