Browse Element(s) Details


OsAffx.31248.1.S1_at

Description tigr:9639.m03903
TID=OsAffx.31248.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4236011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42300OsAffx.7384.1.S1_at11/1111+24972795..24974276F-box domain containing protein, expressed
LOC_Os11g42310OsAffx.31438.1.S1_at11/1111+24975674..24977449F-box domain containing protein
LOC_Os11g42320NANA11+24978783..24984893retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42330NANA11+24985210..24988136retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42340NANA11+24989842..24990264hypothetical protein
LOC_Os11g42350Os.11583.1.S1_at11/1111+24990848..24995516glutathione synthetase family protein, expressed
LOC_Os11g42350Os.38748.1.S1_s_at11/1111+24990848..24995516glutathione synthetase family protein, expressed
LOC_Os11g42360OsAffx.31248.1.S1_x_at11/1111+24996486..24997173hypothetical protein
LOC_Os11g42360OsAffx.31248.1.S1_at11/1111+24996486..24997173hypothetical protein
LOC_Os11g42360OsAffx.31248.2.S1_x_at2/1111+24996486..24997173hypothetical protein
LOC_Os11g42370Os.51179.1.S1_at11/1111+25000231..25001814Transferase family protein, expressed
LOC_Os11g42380OsAffx.19330.1.S1_at11/1111+25002100..25002673hypothetical protein
LOC_Os11g42390OsAffx.19331.1.S1_at11/1111+25008232..25014363Serine carboxypeptidase family protein
LOC_Os11g42390Os.46869.2.S1_x_at5/1111+25008232..25014363Serine carboxypeptidase family protein
LOC_Os11g42400NANA11+25017803..25018554hypothetical protein
LOC_Os11g42410NANA11+25021292..25024910expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31248.1.S1_at--340--4171Chr11:24996572..24996596 (25 bp)
CGCCATGCGCACGTTGGCCGCCATG
LOC_Os11g42360
OsAffx.31248.1.S1_at--243--4391Chr11:24996688..24996712 (25 bp)
CCAAGGCAGGCAGGGACGTCGCCAA
LOC_Os11g42360
OsAffx.31248.1.S1_at--1139--1991Chr11:24996743..24996767 (25 bp)
ACTCGTCGCAGCGAGCAGCTACAAA
LOC_Os11g42360
OsAffx.31248.1.S1_at--45--9411Chr11:24996745..24996769 (25 bp)
TCGTCGCAGCGAGCAGCTACAAAAA
LOC_Os11g42360
OsAffx.31248.1.S1_at--401--7231Chr11:24996747..24996771 (25 bp)
GTCGCAGCGAGCAGCTACAAAAAAT
LOC_Os11g42360
OsAffx.31248.1.S1_at--82--8511Chr11:24996900..24996924 (25 bp)
TGGCAGCGTCGATGCCGGAAGCAGA
LOC_Os11g42360
OsAffx.31248.1.S1_at--427--9391Chr11:24996908..24996932 (25 bp)
TCGATGCCGGAAGCAGATAGTGGCC
LOC_Os11g42360
OsAffx.31248.1.S1_at--396--2791Chr11:24996987..24997011 (25 bp)
AAGAGGCTCGCCGACTGTGTCCGTG
LOC_Os11g42360
OsAffx.31248.1.S1_at--136--1331Chr11:24996988..24997012 (25 bp)
AGAGGCTCGCCGACTGTGTCCGTGC
LOC_Os11g42360
OsAffx.31248.1.S1_at--322--3991Chr11:24997083..24997106 (24 bp)
CGGGCCTCCTCGCTGCGGAGGTCGA
LOC_Os11g42360
OsAffx.31248.1.S1_at--71--1831Chr11:24997109..24997133 (25 bp)
ACGCCAAGAAGCTCGCCAAATGCGT
LOC_Os11g42360
Target Sequence 
CGCCATGCGCACGTTGGCCGCCATGGCGCTCGCCGAACTCTGCAACGCCTCCAGCCACGGCCAGACACGCGGGGACGTCG
GCGACGCCGTCCCGCGCCTCATCTGGATGCTCAAGGCCAAGGCAGGCAGGGACGTCGCCAAGAGGGACGCCGCGGCGAGG
GCGCTTGCCGCACTCGTCGCAGCGAGCAGCTACAAAAAATTTTCAAGAAAGAGGAGCAAGGCATCATCAATGTCGTCCAG
CTGCTCGACCCGAGCACCGCCCGCGGCGGCATTGACGCGTGGTTCCCGGTGTCCGTGCTGCTCGCAGTCTCGCCGTCCCG
GCCGCCCGTGGCAGCGTCGATGCCGGAAGCAGATAGTGGCCGCCGGCGCGTGCTGCTTCCTGCAGGGCCTCCTCGGCGCG
GAGGTCGACGGCGCCAAGAGGCTCGCCGACTGTGTCCGTGCTGCTCGCCGTCTCACCGTCCCGGCGGGCCTCCTCGCTGC
GGAGGTCGACGACGCCAAGAAGCTCGCCAAATGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis