Browse Element(s) Details


Os.51179.1.S1_at

Description gb:AK061327.1
DB_XREF= gi:32971345
TID=Os.51179.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51179 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H12, full insert sequence.
FL= gb:AK061327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4237011/11Transferase family protein, expressed
LOC_Os11g422903/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42310OsAffx.31438.1.S1_at11/1111+24975674..24977449F-box domain containing protein
LOC_Os11g42320NANA11+24978783..24984893retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42330NANA11+24985210..24988136retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42340NANA11+24989842..24990264hypothetical protein
LOC_Os11g42350Os.11583.1.S1_at11/1111+24990848..24995516glutathione synthetase family protein, expressed
LOC_Os11g42350Os.38748.1.S1_s_at11/1111+24990848..24995516glutathione synthetase family protein, expressed
LOC_Os11g42360OsAffx.31248.1.S1_x_at11/1111+24996486..24997173hypothetical protein
LOC_Os11g42360OsAffx.31248.1.S1_at11/1111+24996486..24997173hypothetical protein
LOC_Os11g42360OsAffx.31248.2.S1_x_at2/1111+24996486..24997173hypothetical protein
LOC_Os11g42370Os.51179.1.S1_at11/1111+25000231..25001814Transferase family protein, expressed
LOC_Os11g42380OsAffx.19330.1.S1_at11/1111+25002100..25002673hypothetical protein
LOC_Os11g42390OsAffx.19331.1.S1_at11/1111+25008232..25014363Serine carboxypeptidase family protein
LOC_Os11g42390Os.46869.2.S1_x_at5/1111+25008232..25014363Serine carboxypeptidase family protein
LOC_Os11g42400NANA11+25017803..25018554hypothetical protein
LOC_Os11g42410NANA11+25021292..25024910expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51179.1.S1_at--440--1152Chr11:25001291..25001315 (25 bp)
AGTCGTTCGTCGACTACGTCGAGGT
LOC_Os11g42370
Os.51179.1.S1_at--711--9372Chr11:25001522..25001546 (25 bp)
TCGACCTGTTCGTCGCATTGGCCGA
LOC_Os11g42370
Os.51179.1.S1_at--880--4091Chr11:25001544..25001568 (25 bp)
CGACGATCGCGCACAAGTTTTCGAG
LOC_Os11g42370
Os.51179.1.S1_at--391--4591Chr11:25001552..25001576 (25 bp)
GCGCACAAGTTTTCGAGCAGATCTG
LOC_Os11g42370
Os.51179.1.S1_at--207--1532Chr11:25001567..25001591 (25 bp)
AGCAGATCTGCTACTCGTTGGAGGA
LOC_Os11g42370
Os.51179.1.S1_at--1080--6611Chr11:25001583..25001607 (25 bp)
GTTGGAGGAACATGCTATCCCCTCT
LOC_Os11g42370
Os.51179.1.S1_at--587--10151Chr11:25001598..25001622 (25 bp)
TATCCCCTCTCATCTTTAAATCATA
LOC_Os11g42370
Os.51179.1.S1_at--788--9811Chr11:25001625..25001649 (25 bp)
TAAACTACCTGGGTTGGCCCGCATA
LOC_Os11g42370
Os.51179.1.S1_at--468--10871Chr11:25001638..25001662 (25 bp)
TTGGCCCGCATAATTCCACGGCTAA
LOC_Os11g42370
Os.51179.1.S1_at--1130--71Chr11:25001650..25001674 (25 bp)
ATTCCACGGCTAACATCCACAAAAT
LOC_Os11g42370
Os.51179.1.S1_at--334--5431Chr11:25001748..25001772 (25 bp)
GAACCTTATTATCATTGAGTTTTTA
LOC_Os11g42370
Target Sequence 
AGTCGTTCGTCGACTACGTCGAGGTGGCGGACGCGCGCGGCGAGGAGCTCGCCGCGACGGCGGCGGAGCCGGGGGAGACG
CTGTGCCCGGACCTGGAGGTGGACAGCTGGCTCGGGTTCAGGTTCCACGAGATGGACCTCGGCACCGGGCCGCCGGCCGC
CGTGCTGTCGCCGGACCTGCCCATCGAGGGGCTGATGATCCTCGTGCCGGTGGGCGGCGACGGCGGCGGCGTCGACCTGT
TCGTCGCATTGGCCGACGATCGCGCACAAGTTTTCGAGCAGATCTGCTACTCGTTGGAGGAACATGCTATCCCCTCTCAT
CTTTAAATCATAAATAAACTACCTGGGTTGGCCCGCATAATTCCACGGCTAACATCCACAAAATTATCTATTTTTACATA
TAATTAATTTAAAATTTATTAAATAGTCATTTTGTTGTATTATGAATTTCAAAGATTGAACCTTATTATCATTGAGTTTT
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis